SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene28161

Length: 1275 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene28161 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Patatin T5 precursor, putative	-	-	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	29%
Blast2go	protein	-	-	72%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Patatin/Phospholipase A2-related	IPR002641	-	0.0	72%
Blast2go	Acyl transferase/acyl hydrolase/lysophospholipase	IPR016035	-	0.0	72%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LMU7

Fln msg:

Fln protein: RSMTLKETVKPLLIPCYDLSSAAPFLFSRADALETDNFDFRLWEVCRAAAAAPGFFEPVLMSSVDGQTACTAIDAGLVMNNPTAAAITHVLHNKQEFPSVGGVEDLLVLSIGTGQFDRAYDYDKVKRWGAAHWAKPIFKIVGDAVSDNVDHAMSMAFGQSRRNYVRIQGSGFPEKCMGDADDPSEENVKMLINFADGILKQKSLESLPFGGKRKLSLSNAERLDWLAEQVVAEHLSRLSRPIPTVLLKQPSPPSSLSSSARISP*

Protein Length: 266

Fln nts: CGGAGCATGACGCTGAAGGAAACGGTAAAGCCCCTCTTGATTCCCTGCTATGACCTGTCCAGCGCGGCCCCTTTTCTTTTCTCCCGCGCGGACGCGCTCGAGACTGATAACTTCGACTTCCGCCTCTGGGAAGTCTGCCGGGCGGCGGCGGCAGCGCCGGGGTTCTTCGAGCCCGTGCTCATGAGCTCCGTCGACGGGCAGACCGCCTGCACGGCGATCGACGCTGGGTTGGTGATGAACAATCCCACCGCGGCGGCCATAACCCATGTTCTGCATAACAAGCAGGAGTTTCCGTCTGTGGGAGGCGTGGAGGATTTGCTGGTGCTTTCAATCGGAACCGGGCAGTTCGATCGGGCATACGATTACGACAAGGTGAAGCGATGGGGGGCTGCCCACTGGGCTAAACCCATCTTCAAAATCGTGGGCGATGCAGTGTCCGACAATGTTGATCACGCCATGAGCATGGCATTCGGGCAAAGCAGGCGCAATTACGTCAGGATTCAGGGGAGCGGATTCCCGGAGAAATGCATGGGCGATGCCGACGATCCGAGCGAAGAAAATGTGAAGATGCTGATCAATTTTGCAGACGGCATATTGAAGCAAAAGAGCCTGGAGTCTCTCCCCTTCGGAGGAAAACGAAAGCTCTCTCTCAGCAACGCCGAGAGGCTCGACTGGCTCGCCGAACAGGTGGTTGCAGAGCATCTGTCAAGACTTTCGAGGCCCATTCCCACTGTACTGCTGAAGCAGCCGAGCCCTCCAAGCTCACTATCGAGTTCCGCACGCATATCGCCCTAA___CAATTCCCAATCATTCTTCAAAATGACTTGTTTTGACAGGAAGGGAGAAAAAATCCGAAATGCAGGCACCCTCTGCAATTTTTTAGTGTTTTATATTGATGGGCCAAGTAGGTAATTAACGGTGTTTGTTAGATAGTTTTTGCGGCTACTGGATGTAGCTAATTAACGGCGTTGTTAGATGGTTTTTGCGAGCTGCAATTAGTGACCGGAAGTAGATGATTAACGGCGTTGTTAGATAGGTTTTACGATTAGCCATAGCCGCCGGCTTGCCAGCGATAAAAATCTGAGATCCGAGCCCAGCTGTGCTGTTTGCTGTCTGTACATTATGGTCCTAATATGACTGTACGTGTGGGTGACTGTTCACTGTAACTATATAATGGTATTTGGTTGGATTGATCATCAATGTGTGAAGGCCTTCGTACACTGTAGAGGATTGGGAATGTCTCCGTATGACTGACAAAATTAACACATGAAGTGAAA

Fln Alignment:

sp_v1.1_unigene28161___RSMTLKETVKPLLIPCYDLSSAAPFLFSRADALETDNFDFRLWEVCRAAAAAPGFFEPVLMSSVDGQ---TACTAIDAGLVMNNPTAAAITHVLHNK---QEFPSVGGVEDLLVLSIGTGQFDRAYDYDKVKRWGAAHWAK-----PIFKIVGDAVSDNVD-HAMSMAFGQSRRNYVRIQGSGFPEKCMGD----ADDPSEENVKML
B8LMU7_______________RDIRLNETLTDVVIPAYDINLQQPIIFSSLEARKDKSKDAFLSDVCIGTSAAPMYLPSHCFTTQDSQGKPRSFHLIDGGVAANDPTSLAINHLMNEGLTCKTNPPQNEWSKCLVLSLGTGQKIAGYKATDTAKWGLFGWLNKDGKAPLIDILMQSSTDMVDIHKSFLLKAFNMHTYLRIQ-----EPELGDDRSSFDLSTEENLNGL

SSRs (tot: 1)

Start position	End position	Sequence	Length
1124	1135	GCC GCC GCC GCC	12

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain