SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene28157

Length: 1097 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene28157

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	3-isopropylmalate dehydratase, putative n=1 Tax=Ricinus communis RepID=B9SXE3_RICCO	-	-	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	85%
Blast2go	aconitase c-terminal domain-containing protein	-	-	82%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to salt stress	GO:0009651	Biological Process	0.0	82%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	0.0	82%

Source	InterPros	Term	Type	Identity
Blast2go	Aconitase A/isopropylmalate dehydratase small subunit, swivel	IPR000573	-	82%
Blast2go	3-isopropylmalate dehydratase, small subunit, subgroup	IPR011827	-	82%
Blast2go	Aconitase/3-isopropylmalate dehydratase, swivel	IPR015928	-	82%
Blast2go	Aconitase/isopropylmalate dehydratase	IPR015937	-	82%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NMS1

Fln msg: atg_distance in limit (1-15): atg_distance = 12, W2: There is no M at the beginning,

Fln protein: IGTSELELLVSLAQAMTMACINVKRSVSVSTNLMHFTAKTSSKLALIQTQQISLHFLHKNTLNLHLSATRKNRISTYSVTNSPRAVASQSYDAPTELNNNYFHGKCFVVDDNIDTDQIIPAEYLTLVPSKPDEYEKLGSYAMIGLPARYGRFIEDGQTKTQYSIVIAGANFGCGSSREHAPVALGAAGVKAVVAEYYARIFFRNSVATGEIYPLESECRVCDECKTGDIVTVEIEGNKLINHTTGKEYVLKPIGDAGPVVDAGGIFEYARKTGMIAAPSS*

Protein Length: 282

Fln nts: GAATCGGCACGAGCGAACTCGAACTCTTAGTCAGTCTCGCTCAGGCGATGACAATGGCGTGTATAAACGTTAAGCGTTCTGTTTCTGTAAGTACAAATTTGATGCATTTTACTGCAAAAACAAGCTCAAAATTAGCCCTGATTCAAACCCAACAGATCTCCCTGCATTTTCTGCACAAAAATACCCTAAACTTGCACCTTTCTGCAACACGAAAAAACAGAATATCAACATATTCTGTAACCAATTCCCCAAGAGCAGTAGCATCTCAATCTTATGATGCACCCACAGAGCTAAACAACAATTATTTTCATGGAAAATGTTTTGTGGTAGACGACAACATAGACACTGATCAAATCATCCCAGCAGAATATTTAACCCTTGTGCCCTCCAAACCAGACGAATACGAAAAGTTGGGCAGTTATGCCATGATTGGCCTTCCTGCTAGATATGGCAGATTCATTGAAGATGGCCAGACTAAAACCCAATACTCCATTGTCATTGCTGGGGCCAATTTTGGATGTGGATCATCCAGAGAACATGCCCCTGTGGCTCTTGGGGCAGCAGGAGTGAAGGCTGTAGTGGCAGAGTACTATGCCAGGATATTTTTCAGGAACTCTGTGGCCACCGGTGAGATCTATCCACTGGAGAGCGAGTGCCGGGTTTGCGACGAATGCAAAACTGGTGATATTGTCACTGTGGAGATTGAGGGAAATAAGCTTATCAATCACACCACTGGAAAGGAGTATGTATTGAAGCCTATCGGTGATGCCGGGCCTGTGGTCGATGCTGGCGGGATCTTTGAATATGCTCGCAAAACAGGGATGATTGCTGCTCCATCATCTTGA___GACCTGATGGGGACTTCCCAAGCTACGGAAAGCAGATGGGTGTAGGGATGATTGCTGCTCCATCATCTGGAGACCTGCTAGGGACTTCCCCAGCCGTGAAAAGAAGACGAGTGTAATAAACTTATAAGCTTGTTATTACATTTGAAATCAGATTGTTGGTGTCTGGTAAGAAGCAAATTTTCTTTTTCCATACAATTTGAAACTCCTTTTGATAAGGACAATCTTTGAGAACAAAATTGTTTGTTGGTTTGT

Fln Alignment:

sp_v1.1_unigene28157___IGTSELELLVSLAQAMTMACINVKRSVSVSTNLMHFTAKTSSKLALIQTQQISLHFLHKNTLNLHLSATRKNRISTYSVTNSPRAVASQSYDAPTELNNNYFHGKCFVVDDNIDTDQIIPAEYLTLVPSKPDEYEKLGSYAMIGLPARYGRFIEDGQTKTQYSIVIAGANFGCGSSREHXXXXXXXXXXXXXXXXXXXRIFFRNSVATGEIYPLESECRVCDECKTGDIVTVEIEGNKLINHTTGKEYVLKPIGDAGPVVDAGGIFEYARKTGMIAAPSS
A9NMS1_______________INPSSFGKLSSTSFRMTTAAINAMKSLSVSTNLMHFPAKTSSKLALPQTQQISRQSLHKNVLNFHLSTPRNNRISTYSVPNPPRAVASQSYDALTEPNKKIFHGKCFVVDDNIDTDQIIPAEYLTLVPSKPDEYEKLGSYAMIGLNAKYGRFIEDDQIKTQYPIVIAGANFGCGSSREHAPVALGAAGVKAVVAEYYARIFFRNSVATGEIYPLESECRVCDECKTGDIVTVEIEGNKLINHTTGKEYVLKPIGDAGPVIDAGGIFEYARRTGMIAAPSS

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
560	75		25		0.996473
563	75		25		0.996473
578	16			83	0.994512
584	83		16		0.994512
589	16	83			0.994512
621	14		85		0.993533
622		85		14	0.993533
623		85	14		0.993533
624	85		14		0.993533
625		85	14		0.993533
626		14		85	0.993533
641	14	85			0.993533
668		11		88	0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain