SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene28136

Length: 1617 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene28136

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	potassium efflux antiporter	-	-	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	potassium efflux antiporter	-	-	87%

Source	GOs	Term	Type	e value	Identity
Blast2go	transport	GO:0006810	Biological Process	0.0	87%
Blast2go	cell part	GO:0044464	Cellular Component	0.0	87%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Cation/H+ exchanger	IPR006153	-	0.0	87%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ADL5

Fln msg:

Fln protein: MYCCNSPRFSEIMRHFHIEGGRIFCSICKYPEYLLILRIVACRYCQRSGIEFFCMLDAGTVMPVTIQNVEIQCILNLKLWLGESSPPSLSLKLCSLDDV*

Protein Length: 101

Fln nts: AAAAGCTTCGAGTTGTTGGATCCGTTGCTGTTTTGGGAGGTCTGCTTCAAATCTTGCTTTTCATGTGTTTCTGTGGCATTACTGCCTTGCTATGTGGGGCAAAATCTTCAGAAGGTGTCTTTGTGGGTGCTTTCCTGTCAATGTCATCAACGGCAGTGGTTTTGAAGTTTTTAATGGAACGAAATAGTGTCAATGCCCTTCATGGCCAAGTCACAGTTGGAACTCTTATTCTGCAGGACTGTGCTGTTGGGTTACTATTTGCATTGCTACCTGTTTTGGGTGGAAGCAGTGGACTTTTGCAAGGGATAATGTCAATGATGAAATCGTTAGTAGTATTGTCCATGTTCTTGACAGCTACAAGCATATTATCTTGGTCTTTTGTTCCCCGATTTCTGAAGCTAATGATAGGCCTCTCTTCCCAGACAAATGAACTCTACCAGCTGGCCTCGGTTGCCTTCTGCCTGCTAGTGGCTTGGTGCAGTGACAAGTTAGGTCTGAGCCTTGAACTGGGTTCATTTGCAGCAGGAGTTATGATATCAACCACAGATTTCGCTCACCATACACTTGAGCAAGTTGAACCCATACGTAATCTCTTTGCAGCACTCTTCCTTTGTAGCATTGGAATGCTTATTCATGTCCAGTTTCTCTGGAACCATGTGGATATTTTGCTAGCATCTGTGATTCTGGTGATTATTGCAAAGACCGTTGTGGTTACTATCGTTGTGAAGGGCTTTGGTTACAGCATTAGGACGGCTTTCTTTGTTGGTATGTCCCTGGCTCAGATTGGAGAGTTTGCTTTTGTTCTCTTAAGTCGTGCATCCAATCTTCATCTGATTGAGGGAAAATTGTATCTCTTGCTGCTGGGAACAACAGCGCTTAGCCTGGTCACAACTCCTTTGCTATTTAGAATGATTCCAATAATCATGCATTTGGGTGTACTGATGGGTTGGTTCCCTCCTGACAGCAATCAAACAGAGGTGGTCTCTAAAGGAGAGAACCTTCACCCTGGAAGCACACA_-_ATGTATTGTTGTAACAGTCCAAGGTTCTCAGAAATAATGAGGCATTTTCATATTGAAGGAGGCAGGATATTTTGCAGCATCTGCAAGTATCCTGAATATCTCCTCATTTTAAGGATTGTAGCATGCAGGTACTGTCAAAGGAGCGGGATTGAATTTTTTTGCATGCTGGATGCTGGGACTGTGATGCCGGTTACTATCCAAAACGTTGAGATACAATGCATACTTAATCTTAAGCTTTGGTTAGGAGAGAGCTCACCACCTTCTTTATCGTTGAAATTATGCAGTTTGGATGATGTCTAG___TGACTGCTTTATCAGTAATGAAAGGTTTCCTTTTATGGTGTGGTTCTTGTGTCTATTCCAATCACAATTCAAAGTTTTTAAAAAGAATGCAAAGTTATAAATAGAATCAGCCATGTATTGCTGCTAGAGATAGAGGCTGTAGTACTGTCTTCACCAACAGGTTATTGAGTTCAAGCAGTGAATCTGCAATACCGATGTTCCTTTCTGCATTTAAAAAGCTTAATTATTGTATGATGCTTTTGGATGCAAATGCAGAATATGTTTTCTTTTGAAGGTTAATCCTTCGGATACCTCTTCAA

Fln Alignment:

sp_v1.1_unigene28136___MYCCNSPRFSEIMRHFHIEGGRIFCSICKYPEYLLILRIVACRYCQRSGIEFFCMLDAGTVMPVTIQNVEIQC
D5ADL5_______________MYCCNSPRFSEIMRHFHIEGGRIFCSICKYPGYLLILRIVACRYCQRSGIECFCMLDAGTGMLVTIQNVQIQC

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
922		12		87	0.992554
1114	85	7	3		0.997433
1163		13	86		1.0
1165			86	13	1.0
1166	86	13			1.0
1167			13	86	1.0
1171	86	13			1.0
1172		14		85	1.0
1175			14	85	1.0
1176			14	85	1.0
1177		14		85	1.0
1183		15	85		1.0
1184	15	85			1.0
1227	72			27	1.0
1267		27	72		1.0
1302		27	72		1.0
1339	88			11	0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain