SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene28130

Length: 1268 nt

Origin of reads: Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene28130

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF1995 domain containing protein	-	-	4.00001e-40	26%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	90%
Blast2go	af385707_1 at5g48790 k24g6_12	-	-	0.0	79%

Source	GOs	Term	Type	e value	Identity
Blast2go	chloroplast	GO:0009507	Cellular Component	0.0	79%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9P1J3

Fln msg:

Fln protein: MQFTRLPNSSERLPILSCLQNRCRGDFSLPSQQANVQIFNPDSEIFCRKHWNQRSPKRSISSGFHDPNHLAPGIRRLRTSSDSRTGTSTEIDVDFPVDYSELLEQVKVATQSALMDSKHLLEIEFPTAGLDSVSGDDEGGIEMNSSMTLIREFCRRFLKPEEATRTRIFFPEAKEVEFAKKTVFEGVAFKMDYLTKPSLLEDFGFGTKVKMVKRVQPTDEIFLVAYPYFNVDEMLVVEELYKDAVVHTDRKLIVFNGELDRIRSGYYPPFFYPKIGALARNFLPKFETAYYIHNFKGRVGGTLFRSYPGPWQVLRKVGDKHVCIHQQETMPSLKEVALSILPSS*

Protein Length: 346

Fln nts: TGCTTCAGAGATTATGAAAA_-_ATGCAGTTTACAAGATTACCCAATTCCTCAGAGAGGTTACCCATTTTATCCTGCCTGCAAAACCGTTGTAGAGGGGACTTTTCTTTGCCATCTCAGCAGGCTAATGTGCAAATATTTAATCCAGATTCCGAAATTTTCTGCCGCAAACATTGGAATCAGAGAAGCCCAAAACGGTCAATTTCTTCTGGATTCCATGATCCCAACCATTTGGCCCCTGGTATCCGGAGGCTTAGAACAAGTTCTGACAGTCGTACGGGCACATCAACTGAGATTGATGTGGATTTCCCTGTTGACTACAGCGAACTGCTTGAGCAGGTAAAAGTGGCTACACAGTCAGCATTGATGGATTCAAAGCATTTGCTGGAGATCGAATTTCCAACAGCTGGGCTCGATTCTGTTTCAGGTGATGATGAAGGAGGGATAGAGATGAATTCTAGCATGACACTGATTCGAGAATTCTGTAGACGTTTCTTGAAACCAGAAGAAGCCACACGCACACGGATATTTTTCCCTGAAGCTAAAGAAGTTGAATTCGCTAAGAAAACAGTTTTTGAGGGAGTTGCATTCAAGATGGACTATTTGACCAAGCCATCATTACTAGAAGATTTTGGATTTGGCACAAAAGTGAAAATGGTGAAGCGAGTACAACCGACGGATGAAATATTTTTGGTCGCCTATCCATATTTTAATGTGGATGAGATGCTTGTCGTGGAAGAGCTTTACAAGGATGCAGTTGTGCACACAGATCGCAAACTGATTGTATTCAATGGAGAACTAGACCGAATAAGGAGTGGTTATTATCCTCCATTCTTCTATCCAAAGATTGGAGCCCTTGCAAGGAACTTCTTACCCAAGTTTGAGACTGCATATTATATACACAATTTCAAAGGCCGTGTTGGAGGAACACTTTTCAGGTCATATCCAGGACCCTGGCAAGTACTGAGAAAAGTTGGAGACAAACATGTGTGTATACATCAACAGGAGACTATGCCATCTTTGAAAGAAGTTGCACTAAGCATTCTACCTTCTTCTTGA___TATTTGAATTCTACCCAGATGTCCAAGAAACTTCATTAAAATGTTTCTTGGGAAATGATGTATATATGTTATGGGGTATTCCAAAATGGGAACTATATTCTGGTGTTCTATATTTTGGTGTTTGTCTTGGATAACTTACATATTATCGACAAATAGGAATTTGAAATTTTCATGTTCTTATCAAATAAAATTTATATAATTGTTATTATAATG

Fln Alignment:

sp_v1.1_unigene28130___RLPILSCLQNRCRGDFSLPSQQANVQIFNPDSEIFCRKHWNQRSPKRSISSGFHDPNHLAPGIXXXXXXXXXXXXXXXEIDVDFPVDYSELLEQVKVATQSALMDSKHLLEIEFPTAGLDSVSGDDEGGIEMNSSMTLIREFCRRFLKPEEATRTRIFFPEAKEVEFAKKTVFEGVAFKMDYLTKPSLLEDFGFGTKVKMVKRVQPTDEIFLVAYPYFNVDEMLVVEELYKDAVVHTDRKLIVFNGELDRIRSGYYPPFFYPKIGALARNFLPKFETAYYIHNFKGRVGGTLFRSYPGPWQVLRKVGDKHVCIHQQETMPSLKEVALSILPSS
A9P1J3_______________RLPSLSCLQNRSTGDYSLPFQQANVQIFNSNTQFFCGKHENQRIPKRPISSGFHHPNRLYPGIRRLRASSNSNTSTSTDIDVEFPGDYSELLQQVKVATQSALMDSKYLLEIEFPTAGLDSVSGDAEGGIEMNSSMTLIREFCRRFLKPEEATRTRIFFPEAKEVEFAKKTVFEGVAFKMDYLTKPSLLEDFGFGTKVKMAERVQPTDEIFLVAYPYFNVDEMLVVEELYKDAVVHTDRKLIIFNGELDRIRSGYYPPFFYPKIGALARNFLPKLETAYYIHNFKGRVGGTLFRSYPGPWQVLRKVGDKHVCIHQQETMPSLKEVALSILPSA

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
411		80		20	0.995493
507	75			25	0.996473
510		75	25		0.996473
695		60	40		1.0
762		66		33	0.997452
1251	75		25		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain