SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene28126

Length: 3265 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene28126
GCAGATGTATATTTATTAATAAATAAAAGGAGAGACCTGAGATGCCAAAAGTGTAACTATTTTGTATTTGCATTTGCAGTTGCAGAAGAAGAAGAGCAGGAGAGTACCCAGAAGAATGCAAAGGAAATAGGCAGATTTAAGCAATTATCTAGCTGAAGAATCTGTAACCCTGGCCATGTTCGCCGGTGCAAGGATCGATCCACGCTCCGGCAGCGGCATTGGAAGCTAAAAATCTGCCACGGACTTGTAACGGTTTTTACAGCTTTAGCGCTATTTTTCTGGAGAATTTGGAGAAAATTTTCCTGAGGATAAAAATGGGGATGGTTTTAGGTTCCGGAAGGGCAAAGTCGGACCCCGGATGCTTCCGGGGAGTGTTTTGACCTCGAAAACAGGGGTTTGAACCGCCATTTAAGGCGCATTTGCAGATTCGTGACCAGAAAGTGAGGGTTTGGATAGTATTTGAGCTTGTGCGGTGGAGGCTTTGGATGTAATTGGACAGATCGGGTCAGCGTGAGGTATGTCGGACTCTAACGGCTCCCTGGCCGATGATGAGCTTTTGCAGGACTACTTGTATGGAAACGGCAGACCGCCTATACCCGAATCGGCCGGGCCGATGCTCACGGTATCGTCGTCCTTTAAATCAGACGGTAAGAGTAAGAGGAAAAGCTTGAGGCGGCCGAGTTTGGAGGCGGACGAGTTCTTGAATCTGTTGCACGGGTCTGATCCTGTCAAAGTTGAGCTCAATCGCCTCGAAAACGAAGTAAGAGATAAGGATAGAGAGTTAAGTGAAGCTCAAGCCGAAATCAAGGCCTTGAAGCTGTCAGAGCGCTCGAAAGAGAAGGCGGTGGAAGAGCTTACAGAGGAGCTTAGGAAATTGGACGAAAAACTGAAGGCTAACGAGATCCTTCTTGAAAATAGGAACCTTGATATAAAGAAAATAACTGATGAGAAGAAAGCTGCATTGGCTGCACAATTTGCAGCAGAAGCTACTCTTCGAAGGGTGCATGCTGCTCAAAAAGATGATGACATGCCACCGATTGAAGCTATTCTTGCACCAGTGGAGGCGGAACTTAAACTTGCCCGGCAAGAGATCATGAAATTGCAGGAAGACAATAGGGCTTTGGAACGACTTACCAAGTCAAAGGAAGCAGCTTTGCTCGATGCAGAGAGGACAGTGCAAATCGCTTTAGCAAAAGCTTCAATGGTTGATGATCTTCAAAATAGGAACCAAGAACTGGTGAAACAGATTGAAATTTGTCAGGAAGAGAACAAAATTTTGGACAAAATGCACCGTCAAAAAGTAGCAGAGGTTGAGAAGCTAAGCCAAACTGTTCGTGAGCTTGAGGAAGCTGTTCTTGCTGGGGGAGCTGCTGCAAATGCAGTGCGTGATTATCAGCGGAAAGTTCAAGAAATGAATGAAGAGAGGAAAACCTTGGATAGAGAACTGGCACGTGCAAAGGTTACTGCAAATCGAGTTGCAGTTGTAGTTGCAAATGAATGGAAGGATGCCAATGATAAAGTTATGCCTGTGAAGCAGTGGCTTGAAGAACGTCGCTTCATCCAGGGTGAAATGCAGCAGCTTCGGGACAAGTTAGCCATTACTGAAAGAGCTGCCAAGTCTGAGGCACAGCTCAAAGAAAAGTTCCAATTACGATTAAAAGTCTTGGAAGATGGACTAAGGTCATCTTCAAATGGTGCTGTTCGCATGGAGCTGCGAAGTTGCAGCAATGGTCGTTCACGCCGTCAATCGATAGGGGGTGCTGAAAGTTTATCAAGATCACCTTCAAATGGATTTGGACCGAGGAAGGCATCAGTACCCCAACAGAGGGCTCCCATATCTAGCAACACAAATACAATCCTAAAACATGCAAAAGGAACCTCAAAATCTTTTGATGGTGGCAGACCAATTGAATGCATTAGGTCACTGGACAGGAACAAGTCTTTTACAAATGGATTTGAGGGGCACCAATCAACTGGAAAAGATCATGAGGTGTCAAGAAACACTGAATCGCAAGATACATGGAAGGACGATTCAGATAACAAGCCGCCTGAATTTGTAGAAGTTGGTCAGGATGATATGGTGTCGGGGTTGTTGTATGATATGCTGCAGAAGGAGGTCATAGCATTGAGAAAGGCCAGCCATGAGAAGGATCAGAGTCTCAAGGATAAGGATGATGCAATAGAGATGCTAGCAAAGAAAGTGGATACCTTAACAAAAGCAATGGAGGTTGAAGCCAAAAAAATGCGCAGGGAAGTAGCTGCTATGGAGAAAGAAGTAGCTGCAATGCGGATTGACAAGGAGCATGATCAACGGGCAAGACGCCTGACAAGCTCCAAGTCTGTCAATAGCTCTCAATTTCTTTCTGGAAGGAGTACAAGAAACAATTGAACTGTCTGACCGATGGATATTATCTTCAGAACTGCCCAGCACTTGAGTCCCTGTCAATGCACCTTGATTTGGAAAGATGCATTGCTATATGTGACTGTATTTACTCCACCAGAAGGTGTGGCTACTTGCAGGGTAGTGCATTTTAATCTCATAAAATGAGATTATTAAGGTCTCTGCTTGCCTAGCATTACACAATTATGTTCATGTGTATGCTTCCTGGCTATGGCGTGACAAATGACATTACAGGGGAAGACCAAGCTACTTGTTGCGTGTGCGGTATGGAAATGATGATGACAGGAGACCTAACCTCATGTATACAGAGCAAATTGTTGGTACTAATTGAGCTGGAGGGATGAGCTTGATTACTTTTGGGTTTATCTTTTGTGTTATGTTGATCAGCAACATCTCAAAGTCCACTAGTATATTGTAGGTATGTAAGATGTAGTGTGTGCTGCGTGCTTCTTGGCTCCTCAAAAGAGTTACAGAATGTGATTGCTTTATAATGGGATGTTAGTGTGTTGGGACATAAAATTTGTGAATATTCGTTTGGTAGTAATTGATTTGTTTTTTCATTCACTTCCCAATACATCTGTATCACTAACTGGTTTTATTGTTTGAATGCAACCTTACGGTGCTTTGCTTGCTCAATCTGGAGCACACATGCATTTAACAGTGCACGTTGTCTTTGAAATGTCTTGCCGGGAATGTGTAATGTTGTCCATTCTGCATCCTATGCTGAGTTGTTCCATTGACACCTTGGCAGAGGGCTTTCTCGAGTCATAGTTGTATTTTTGTCAGACTGATGGTAGCAAATTGTTTGCATTTTGGATTTCACACCACAGTATTTTTTATAAATAATGACTGCTTTAAACTTGT

Ace file of the UniGene sp_v1.1_unigene28126 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ATMAP70-2 (microtubule-associated proteins 70-2); microtubule binding	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	at1g68060 t23k23_9	-	-	82%

Source	GOs	Term	Type	e value	Identity
Blast2go	microtubule binding	GO:0008017	Molecular Function	0.0	82%
Blast2go	cortical microtubule, transverse to long axis	GO:0010005	Cellular Component	0.0	82%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Myosin II heavy chain-like	IPR009768	-	0.0	82%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ABU8

Fln msg: your sequence is longer than subject: 624 - 67

Fln protein: MSDSNGSLADDELLQDYLYGNGRPPIPESAGPMLTVSSSFKSDGKSKRKSLRRPSLEADEFLNLLHGSDPVKVELNRLENEVRDKDRELSEAQAEIKALKLSERSKEKAVEELTEELRKLDEKLKANEILLENRNLDIKKITDEKKAALAAQFAAEATLRRVHAAQKDDDMPPIEAILAPVEAELKLARQEIMKLQEDNRALERLTKSKEAALLDAERTVQIALAKASMVDDLQNRNQELVKQIEICQEENKILDKMHRQKVAEVEKLSQTVRELEEAVLAGGAAANAVRDYQRKVQEMNEERKTLDRELARAKVTANRVAVVVANEWKDANDKVMPVKQWLEERRFIQGEMQQLRDKLAITERAAKSEAQLKEKFQLRLKVLEDGLRSSSNGAVRMELRSCSNGRSRRQSIGGAESLSRSPSNGFGPRKASVPQQRAPISSNTNTILKHAKGTSKSFDGGRPIECIRSLDRNKSFTNGFEGHQSTGKDHEVSRNTESQDTWKDDSDNKPPEFVEVGQDDMVSGLLYDMLQKEVIALRKASHEKDQSLKDKDDAIEMLAKKVDTLTKAMEVEAKKMRREVAAMEKEVAAMRIDKEHDQRARRLTSSKSVNSSQFLSGRSTRNN*

Protein Length: 625

Fln nts: GCAGATGTATATTTATTAATAAATAAAAGGAGAGACCTGAGATGCCAAAAGTGTAACTATTTTGTATTTGCATTTGCAGTTGCAGAAGAAGAAGAGCAGGAGAGTACCCAGAAGAATGCAAAGGAAATAGGCAGATTTAAGCAATTATCTAGCTGAAGAATCTGTAACCCTGGCCATGTTCGCCGGTGCAAGGATCGATCCACGCTCCGGCAGCGGCATTGGAAGCTAAAAATCTGCCACGGACTTGTAACGGTTTTTACAGCTTTAGCGCTATTTTTCTGGAGAATTTGGAGAAAATTTTCCTGAGGATAAAAATGGGGATGGTTTTAGGTTCCGGAAGGGCAAAGTCGGACCCCGGATGCTTCCGGGGAGTGTTTTGACCTCGAAAACAGGGGTTTGAACCGCCATTTAAGGCGCATTTGCAGATTCGTGACCAGAAAGTGAGGGTTTGGATAGTATTTGAGCTTGTGCGGTGGAGGCTTTGGATGTAATTGGACAGATCGGGTCAGCGTGAGGT_-_ATGTCGGACTCTAACGGCTCCCTGGCCGATGATGAGCTTTTGCAGGACTACTTGTATGGAAACGGCAGACCGCCTATACCCGAATCGGCCGGGCCGATGCTCACGGTATCGTCGTCCTTTAAATCAGACGGTAAGAGTAAGAGGAAAAGCTTGAGGCGGCCGAGTTTGGAGGCGGACGAGTTCTTGAATCTGTTGCACGGGTCTGATCCTGTCAAAGTTGAGCTCAATCGCCTCGAAAACGAAGTAAGAGATAAGGATAGAGAGTTAAGTGAAGCTCAAGCCGAAATCAAGGCCTTGAAGCTGTCAGAGCGCTCGAAAGAGAAGGCGGTGGAAGAGCTTACAGAGGAGCTTAGGAAATTGGACGAAAAACTGAAGGCTAACGAGATCCTTCTTGAAAATAGGAACCTTGATATAAAGAAAATAACTGATGAGAAGAAAGCTGCATTGGCTGCACAATTTGCAGCAGAAGCTACTCTTCGAAGGGTGCATGCTGCTCAAAAAGATGATGACATGCCACCGATTGAAGCTATTCTTGCACCAGTGGAGGCGGAACTTAAACTTGCCCGGCAAGAGATCATGAAATTGCAGGAAGACAATAGGGCTTTGGAACGACTTACCAAGTCAAAGGAAGCAGCTTTGCTCGATGCAGAGAGGACAGTGCAAATCGCTTTAGCAAAAGCTTCAATGGTTGATGATCTTCAAAATAGGAACCAAGAACTGGTGAAACAGATTGAAATTTGTCAGGAAGAGAACAAAATTTTGGACAAAATGCACCGTCAAAAAGTAGCAGAGGTTGAGAAGCTAAGCCAAACTGTTCGTGAGCTTGAGGAAGCTGTTCTTGCTGGGGGAGCTGCTGCAAATGCAGTGCGTGATTATCAGCGGAAAGTTCAAGAAATGAATGAAGAGAGGAAAACCTTGGATAGAGAACTGGCACGTGCAAAGGTTACTGCAAATCGAGTTGCAGTTGTAGTTGCAAATGAATGGAAGGATGCCAATGATAAAGTTATGCCTGTGAAGCAGTGGCTTGAAGAACGTCGCTTCATCCAGGGTGAAATGCAGCAGCTTCGGGACAAGTTAGCCATTACTGAAAGAGCTGCCAAGTCTGAGGCACAGCTCAAAGAAAAGTTCCAATTACGATTAAAAGTCTTGGAAGATGGACTAAGGTCATCTTCAAATGGTGCTGTTCGCATGGAGCTGCGAAGTTGCAGCAATGGTCGTTCACGCCGTCAATCGATAGGGGGTGCTGAAAGTTTATCAAGATCACCTTCAAATGGATTTGGACCGAGGAAGGCATCAGTACCCCAACAGAGGGCTCCCATATCTAGCAACACAAATACAATCCTAAAACATGCAAAAGGAACCTCAAAATCTTTTGATGGTGGCAGACCAATTGAATGCATTAGGTCACTGGACAGGAACAAGTCTTTTACAAATGGATTTGAGGGGCACCAATCAACTGGAAAAGATCATGAGGTGTCAAGAAACACTGAATCGCAAGATACATGGAAGGACGATTCAGATAACAAGCCGCCTGAATTTGTAGAAGTTGGTCAGGATGATATGGTGTCGGGGTTGTTGTATGATATGCTGCAGAAGGAGGTCATAGCATTGAGAAAGGCCAGCCATGAGAAGGATCAGAGTCTCAAGGATAAGGATGATGCAATAGAGATGCTAGCAAAGAAAGTGGATACCTTAACAAAAGCAATGGAGGTTGAAGCCAAAAAAATGCGCAGGGAAGTAGCTGCTATGGAGAAAGAAGTAGCTGCAATGCGGATTGACAAGGAGCATGATCAACGGGCAAGACGCCTGACAAGCTCCAAGTCTGTCAATAGCTCTCAATTTCTTTCTGGAAGGAGTACAAGAAACAATTGA___ACTGTCTGACCGATGGATATTATCTTCAGAACTGCCCAGCACTTGAGTCCCTGTCAATGCACCTTGATTTGGAAAGATGCATTGCTATATGTGACTGTATTTACTCCACCAGAAGGTGTGGCTACTTGCAGGGTAGTGCATTTTAATCTCATAAAATGAGATTATTAAGGTCTCTGCTTGCCTAGCATTACACAATTATGTTCATGTGTATGCTTCCTGGCTATGGCGTGACAAATGACATTACAGGGGAAGACCAAGCTACTTGTTGCGTGTGCGGTATGGAAATGATGATGACAGGAGACCTAACCTCATGTATACAGAGCAAATTGTTGGTACTAATTGAGCTGGAGGGATGAGCTTGATTACTTTTGGGTTTATCTTTTGTGTTATGTTGATCAGCAACATCTCAAAGTCCACTAGTATATTGTAGGTATGTAAGATGTAGTGTGTGCTGCGTGCTTCTTGGCTCCTCAAAAGAGTTACAGAATGTGATTGCTTTATAATGGGATGTTAGTGTGTTGGGACATAAAATTTGTGAATATTCGTTTGGTAGTAATTGATTTGTTTTTTCATTCACTTCCCAATACATCTGTATCACTAACTGGTTTTATTGTTTGAATGCAACCTTACGGTGCTTTGCTTGCTCAATCTGGAGCACACATGCATTTAACAGTGCACGTTGTCTTTGAAATGTCTTGCCGGGAATGTGTAATGTTGTCCATTCTGCATCCTATGCTGAGTTGTTCCATTGACACCTTGGCAGAGGGCTTTCTCGAGTCATAGTTGTATTTTTGTCAGACTGATGGTAGCAAATTGTTTGCATTTTGGATTTCACACCACAGTATTTTTTATAAATAATGACTGCTTTAAACTTGT

Fln Alignment:

sp_v1.1_unigene28126___MLAKKVDTLTKAMEVEAKKMXXXXXXXXXXXXXXRIDKEHDQRARRLTSSKSVNSSQFLSGRSTRNN
D5ABU8_______________MLAKKVDTLTKAMEVEAKKMRREVAAMEREVAAMRIDKEHDQRARRLTSSKSVNSSQFLSGRTTRNN

SNPs (tot: 47)

Position	A %	C %	G %	T %	Probability
307	25		75		0.996473
332	77		22		0.999999
1823			20	80	0.995493
1825		80	20		0.995493
1826	20			80	0.995493
1830			20	80	0.995493
1839		25		75	0.996473
1840	25			75	0.996473
1843		75	25		0.996473
1844	25			75	0.996473
1846			25	75	0.996473
2784		75	25		1.0
2786	75		25		1.0
2787	75			25	1.0
2791	25	75			1.0
2792			25	75	1.0
2796	25	75			1.0
2797		66	25	8	1.0
2799	8			25	1.0
2803	8		25		1.0
2805	75	25			1.0
2812	87		12		0.992554
2816			12	87	0.992554
2820		87	12		0.992554
2850	85	14			0.993533
2851	85	14			0.993533
2900		14		85	0.993533
2980		85		14	0.993533
3179		12		87	0.992554
3181		12		87	0.992554
3182		12		87	0.992554
3183	12	87			0.992554
3184	12			87	0.992554
3190	85	14			0.993533
3191	85	14			0.993533
3194		16	83		0.994512
3196	66	33			1.0
3197	66	33			1.0
3219	75	25			0.996473
3221		25		75	0.996473
3222	25	25	25	25	0.997389
3224	25	25	25	25	0.997389
3225		25		75	0.996473
3226	33	33	33		0.997753
3227	33	33	33		0.997753
3229	66			33	0.997452
3230			33	66	0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
3171	3182	TCT TCT TCT TCT	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain