SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene28111

Length: 557 nt

UniGene Fasta

>sp_v1.1_unigene28111
GCCAATATGGCCAGTTTTTCATAAAGAAAGAGCAGATGAGGTAAGGCAAGGCAAAGCTAATAGGGCGTAAGAAGCAAAATGTTGGCCATGGCGAGCCCCTGTACTACTGCTTCTCCTTCCTGCACAAGTATGCATTCATCTCTGCATATATTCAGACCACCCACCTGTTCTTTATCTCGTATCTCCCCCAAAACCTTCTTCACAGGAAGAAATCTTCAAGTCTCCCAAAACAAGGTTGCAGGCAATCAATCACCAAGAATTAGCTGCAGTAGGCTGCAAATTCGGTGCGGAGGAGAAATTTACATCCCCGAAGAACATCGGGAGCTCTATGAAGAGATTGAGAAGCTCGGTCCTATTATCTCACAGAAAACTTGGTATCCAAAGGCAGCAGATCATGAAAATGCCAAGAAAAAGTGGTATATTGTTGATGCTACAGACAAAATTCTTGGAAGGCTGGCATCAACCATAGCTATACACATTCGTGGAAAGAATCTAGCAACCTTTACTCCGAGTGTGGACATGGGAGCATATGTTATTGTGGTTAATGCAGAAAAAAT

Ace file of the UniGene sp_v1.1_unigene28111

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	50S ribosomal protein L13, putative n=1 Tax=Ricinus communis RepID=B9T1K1_RICCO	-	-	1.0e-30	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	87%
Blast2go	protein	-	-	0.0	78%

Source	GOs	Term	Type	e value	Identity
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	0.0	78%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Ribosomal protein L13	IPR005822	-	0.0	78%
Blast2go	Ribosomal protein L13 domain	IPR023564	-	0.0	78%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NUT8

Fln msg: Distance to subject end: 89 aas, your sequence is shorter than subject: 159 - 249

Fln protein: MLAMASPCTTASPSCTSMHSSLHIFRPPTCSLSRISPKTFFTGRNLQVSQNKVAGNQSPRISCSRLQIRCGGEIYIPEEHRELYEEIEKLGPIISQKTWYPKAADHENAKKKWYIVDATDKILGRLASTIAIHIRGKNLATFTPSVDMGAYVIVVNAEK

Protein Length: 160

Fln nts: GCCAATATGGCCAGTTTTTCATAAAGAAAGAGCAGATGAGGTAAGGCAAGGCAAAGCTAATAGGGCGTAAGAAGCAAA_-_ATGTTGGCCATGGCGAGCCCCTGTACTACTGCTTCTCCTTCCTGCACAAGTATGCATTCATCTCTGCATATATTCAGACCACCCACCTGTTCTTTATCTCGTATCTCCCCCAAAACCTTCTTCACAGGAAGAAATCTTCAAGTCTCCCAAAACAAGGTTGCAGGCAATCAATCACCAAGAATTAGCTGCAGTAGGCTGCAAATTCGGTGCGGAGGAGAAATTTACATCCCCGAAGAACATCGGGAGCTCTATGAAGAGATTGAGAAGCTCGGTCCTATTATCTCACAGAAAACTTGGTATCCAAAGGCAGCAGATCATGAAAATGCCAAGAAAAAGTGGTATATTGTTGATGCTACAGACAAAATTCTTGGAAGGCTGGCATCAACCATAGCTATACACATTCGTGGAAAGAATCTAGCAACCTTTACTCCGAGTGTGGACATGGGAGCATATGTTATTGTGGTTAATGCAGAAAAAAT

Fln Alignment:

sp_v1.1_unigene28111___MLAMXXXXXXXXXXXXXMHSSLHIFRPPTCSLSRISPKTFFTGRNLQVSQNKVAGNQSPRISCSRLQIRCGGEIYIPEEHRELYEEIEKLGPIISQKTWYPKAADHENAKKKWYIVDATDKILGRLASTIAIHIRGKNLATFTPSVDMGAYVIVVNAEK
A9NUT8_______________MLAMASPCTAVTPSYTRMNSSLHMFRPPNCSLSRIPPKSSFTGKILQVPQNKVADIKSPRSSCSKLQIRCGGEIYIPEEHRELYEEIEKLGPIISQKTWYPKAADHENAKKTWYIVDATDKILGRLASTIAIHIRGKNLATFTPSVDMGAYVIVVNAEK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain