SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene28086

Length: 1584 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene28086

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	plastid protein	-	-	82%

Source	GOs	Term	Type	Identity
Blast2go	endonucleolytic cleavage of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)	GO:0002103	Biological Process	82%
Blast2go	plastid organization	GO:0009657	Biological Process	82%
Blast2go	chloroplast	GO:0009507	Cellular Component	82%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NL07

Fln msg:

Fln protein: MVSVISTEPACGSFYSTSNASAAMPLVLSRAIRLRPIIAFSASSSRRLSSQSPHPISSRSARLSSPLFNNPLVAISHGVVQMPKAPVSRLTVRCKVTNNSGYSPLNNSSPNWSDRPPVETAPLFPGCDYEHWLIVMDPPNEGKATKQEMIDCYIQTLAKVLGSEEAAKKSIYNVSCERYFGFGCQIDEETSNKLVGLPGVVFVLPDSYVDAEYKDYGGELLVDGKIVERSPERQRRVTPAPQRNNDRPRYNDRTRYVRRRENQNQGR*

Protein Length: 269

Fln nts: GTCAAAGATGAATGATTAGAGCATTGATTTGTAATGGTAAATCTGCTCATACTTGTGCATCGCTCCAATCCATGTCCATCCATTCCCAATCTAATTTTATCGTTCCGAGTTCTTGGCGGAGGACGCTAAGATAATCTCTAACTAACTGCAATATTCTGCAACATCTGACAATTCACAACTCTTAAACCCTATCAATTCAACTCTATCTCTAACCCGCAAAACCTCAACCCTTC_-_ATGGTTTCTGTAATCAGCACAGAGCCTGCCTGCGGGTCGTTCTACTCTACGTCCAACGCATCGGCCGCCATGCCTCTCGTCCTCTCTCGTGCAATTCGCCTGCGCCCGATTATAGCATTCTCCGCCTCCTCTTCAAGGAGGCTTTCATCACAATCACCACACCCGATATCCTCCCGCTCTGCCCGTCTATCTTCTCCGCTGTTCAACAACCCTTTGGTCGCCATTTCCCATGGAGTCGTCCAGATGCCTAAAGCTCCAGTGAGCCGGCTCACAGTGCGCTGCAAGGTCACAAACAATTCAGGGTATTCCCCGCTCAACAATTCATCGCCGAACTGGAGCGACCGCCCGCCCGTGGAGACTGCGCCCCTTTTCCCCGGCTGCGACTATGAGCACTGGCTTATTGTCATGGACCCTCCCAATGAGGGTAAGGCCACCAAGCAGGAAATGATCGACTGCTATATCCAAACCCTCGCTAAGGTGCTGGGAAGCGAGGAAGCAGCGAAAAAATCTATTTACAATGTGTCTTGCGAACGATACTTTGGTTTTGGATGCCAGATCGACGAGGAAACCTCCAATAAACTCGTGGGGCTTCCTGGAGTGGTGTTTGTTCTACCAGATTCATACGTGGATGCAGAATATAAGGATTATGGAGGGGAACTATTGGTTGATGGAAAGATAGTTGAGAGATCTCCAGAAAGACAGCGGCGTGTCACTCCTGCTCCTCAGCGGAACAATGATAGACCCAGATACAATGATAGAACAAGATATGTCAGACGAAGGGAAAATCAGAATCAAGGTCGTTGA___TCAACGTTCTCTCCTAAAACTAGAGTGAATAGACAATTGATGGTATACGATGGACTTGAACAGTTGTAATATCCTGATTGTGGTAGAATGCTACTTCAAAGTGATCATCATTAGAACATCCTATATTGGTTGTTTGCTGAGCACCTTCTTAATATAGGGGGTTTTAACTGTCTGTTAATGTGGGTGAAGTCTTGTTTTGCTGAAGAACATGTTATCAGAGTTACACATGTAAAGCTAGCATTTAAAGTGCCCTCTTATATGGACTTCATTTAATGGATAGTTTATGAATGCGTTAACTTGTAAAGGAGACACTAATGGCAAGGCTACATATTTGGAATTCTTCGAAGACAAGTCTGGGGTATTATGGTTTCCATCTTACATTGGTGAGACTATTTCATGCTCTAGGGTGGTCTGTGTTTGGTTTTACAATGGTGTTGTTTTCTTTCAAAATAGAATTTGGAAATTACTTTGGTTTCTAAATTTTTCTTTCTTTTGGTTGAGTGTCACAGGAAATGCCTTTGTTATGGTAATGCAACATGGCTTTTTT

Fln Alignment:

sp_v1.1_unigene28086___MVSVISTEPACGSFYSTSNASAAMPLVLSRAIRLRPIIAFXXXXXXXXXXXXXXXXXXXXARLSSPLFNNPLVAISHGVVQMPKAPVSRLTVRCKVTNNSGYSPLNNSSPNWSDRPPVETAPLFPGCDYEHWLIVMDPPNEGKATKQEMIDCYIQTLAKVLGSEEAAKKSIYNVSCERYFGFGCQIDEETSNKXXXXXXXXXXXXDSYVDAEYKDYGGELLVDGKIVERSPERQRRVTPAPQRNNDXXXXXXXXXXXXXXENQNQGR
A9NL07_______________MVSVISTERACG--FLSSNASVAMPLVLPRAMRLRPVMAFCSSSARRLSSQSPHPIPSLSARLSSPLFNNPLVAVSHGAVQAPKVSVSRLTVRCKVTNNSGYSPLSNSSPNWSDRPPVETAPLFPGCDYEHWLIVMDPPNEGKATKQEMIDCYIQTLAKVLGSEEAAKKSIYNVSCERYFGFGCQIDEETSNKLVGLPGVVFVLPDSYVDAEYKDYGGELLVDGKIVERSPERQRRVTPAPQRNNDRPRHNDRTRYVRRRENQNRGR

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
612			25	75	0.996473
634	20			80	0.995493
637			20	80	0.995493
638		80	20		0.995493
1194		3	90		0.996531
1329		13	86		1.0
1389	28		71		1.0
1390	28			71	1.0
1391	28	71			1.0
1392	28			71	1.0
1393	33		66		1.0

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain