SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene28080

Length: 1399 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene28080

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Putative auxin response factor ARF16 n=1 Tax=Malus x domestica RepID=B6DXL3_MALDO	-	-	38%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	59%
Blast2go	auxin response factor 10	-	-	55%

Source	InterPros	Term	Type	e value	Identity
Blast2go	AUX/IAA protein	IPR003311	-	0.0	55%
Blast2go	Aux/IAA-ARF-dimerisation	IPR011525	-	0.0	55%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A843

Fln msg: your sequence is longer than subject: 335 - 264

Fln protein: MGGLQMATLTNNVLGQINPWHGLSENVPAGMQGARHGHIYGVSLSDFHSNKLQSGLSLDSFHQLEQGALSSTPVSTDLNIGCFSQLERSSVQDNLSCVLTMGNSSQSEQKATKGRSTSSTTKSAPFLLFGKPIHTEQSPKSEQQQQSGVSSSDGPGFHVVNDSGSPGLTSNSSTDGNPEVVDRLQRAMAGRSDTSKLSENYGLRLYCGETLDSTVNNGGGNLSWFKDRQVSLQTLENGSGGKTSEDGVIHCKAFLESEDVGRTLDLSLFSSYEELHNKLAKMFGIEDSDLSNRVLYKDAAGVGRHTGEQPYGDFMKTVRRLTILSDSSSDNMGR*

Protein Length: 336

Fln nts: CAATTGTCACCTTTCACGCTACCCAAGAAGAAGCTCCGAGTGAGTCAACATCCGGAGTTTCAGTTTGAGGGGCATGGAATC_-_ATGGGAGGACTTCAAATGGCTACACTTACTAATAATGTGCTAGGGCAGATTAACCCTTGGCACGGTCTTTCAGAAAATGTTCCTGCAGGCATGCAGGGAGCCAGGCATGGTCATATTTATGGGGTTTCTTTGTCAGATTTTCATTCAAACAAACTGCAATCTGGGTTGTCATTAGATAGCTTCCACCAGCTAGAGCAAGGAGCACTCTCATCAACCCCTGTTTCCACAGACCTCAACATTGGTTGTTTCTCCCAGCTTGAGCGCTCTAGTGTACAGGACAACCTATCTTGTGTTTTAACAATGGGAAACTCATCGCAAAGCGAACAGAAAGCAACTAAGGGGAGGTCCACTAGCTCAACCACAAAGAGTGCACCCTTTCTGCTGTTTGGGAAACCTATTCACACTGAACAGTCTCCCAAATCTGAACAGCAACAGCAATCAGGAGTGAGCTCTTCAGATGGTCCAGGTTTTCATGTGGTGAATGACTCTGGTTCACCTGGGCTTACAAGCAACAGCTCAACAGATGGAAATCCAGAAGTTGTAGACAGATTACAAAGGGCAATGGCCGGTAGATCAGATACATCCAAACTCTCTGAAAATTATGGCTTAAGGCTTTATTGTGGGGAGACATTGGACTCTACAGTTAACAATGGTGGTGGTAACCTTTCATGGTTTAAAGATCGTCAAGTTTCTTTACAGACCTTGGAGAATGGCAGTGGAGGAAAGACATCTGAAGATGGTGTTATACATTGCAAAGCATTCTTGGAGTCTGAAGATGTTGGTCGGACCCTAGATCTATCACTGTTCAGTAGCTATGAAGAGCTCCACAACAAGCTAGCCAAGATGTTTGGCATAGAAGATTCAGATCTATCAAACCGTGTTCTTTACAAAGATGCAGCTGGTGTTGGAAGGCACACGGGGGAACAACCATATGGGGATTTTATGAAGACTGTAAGGAGGCTTACAATCTTGTCTGATTCCAGCAGTGACAACATGGGCAGATGA___CAAGATCAGCTTTTAAAGTTGCATGCCTGATTCTTCTACAACCTGGTCGGCATGAAACTCCAAAGATGTCTTAGACTTTTGACAGTCTCTGCTCATGGCAGATTCTATTTTGTATTTGATATAAAATATCAAGATGGAATGATGGAAATTTTTGCAAAATATATTTCCTGAATAATCCAATTTCTGATTAGCTGTACAGTGAATGCCTTCCAAAGTGTTAGAATTTTTTGCTATTGTTTTTTATTGACATTGCTACCTTTAGAGGAAATTGGATATCCTCTGTCAATTTTCTTTCAATGATATATTCAAATTT

Fln Alignment:

sp_v1.1_unigene28080___STPVSTDLNIGCFSQLERSSVQDNLSCVLTMGNSSQSEQXXXXXXXXXXXXXXAPFLLFGKPIHTXXXXXXXXXXXXXXXXXDGPGFHVVNDSGSPGLTSNSSTDGNPEVVDRLQRAMAGRSDTSKLSENYGLRLYCGETLDSTVNNGGGNLSWFKDRQVSLQTLENGSGGKTSEDGVIHCKAFLESEDVGRTLDLSLFSSYEELHNKLAKMFGIEDSDLSNRVLYKDAAGVGRHTGEQPYGDFMKTVRRLTILSDSSSDNMGR
D5A843_______________STPVCTELNIGNSPQNDGSGMQSSPSSLLTVGNSSQNEQKTSSGSASSSTPKGSSFFLFGKPIHTAQSPKSYQQHQSGLSSSDGAAFHMFTENGSPGQSSNTSSNGNQEALERVQKLITGGRDGTKLSENYGLRLSHGESLDYAGTKGVRSLQWFKD-QASILKLEKDKQENTCEDSIVHCKVFKETEEVGRTLDLSLFCTYEQLYDRLAKMFGIEESELSNRVLYKGLGGSVRHAGDEPYKDFMKTVRRLTILSDSGSDNMAR

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
177	66	33			0.997452
262		66		33	1.0
276	88		11		0.923564
557			88	11	0.923564
617	11		88		0.923564
649		88		11	0.923564
1158			14	85	0.999981

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain