SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene28063

Length: 1569 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene28063

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ubiquitin-protein ligase, putative; K10589 ubiquitin-protein ligase E3 C [EC:6.3.2.19]	-	-	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	upl6 (ubiquitin protein ligase 6) ubiquitin-protein ligase	-	-	75%

Source	ECs	Term	Type	e value	Identity
AutoFact	Ubiquitin--protein ligase.	EC:6.3.2.19	-	0.0	60%

Source	InterPros	Term	Type	e value	Identity
Blast2go	HECT	IPR000569	-	0.0	75%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKQ9

Fln msg: Distance to subject end: 96 aas, your sequence is shorter than subject: 522 - 1032

Fln protein: YGDISGFGDSTFTEGPSVKEAAAVTALCAFLHVSITMLPLENVMTGLAYTTELVPTLWHYMKRCHLSQRWPSMEALAEFFPGDAPGWLLPLSVFCPLYRHMLMIIDNEEFYEQQKPLPLQDVKALVIILKEALWQLLWVIPSKTSAPQKTVHFGSNQKRFPLQSIRERVSTVAAELLAQLQDWNCRREFTSPNDFHARDAVDGMFYAQAGSENSRAHELLKRAPFLVPFTNRVQIYTSQLAAARQQNSFHTPFVRHRIRIRRNRAVEDAFTELNGLTGEELRGMIRVIFVNEFGVEEPGVDGGGIFKDFMENITKTAYEIQYGLFKETADHLLYPNPASGTIHPEHLQYFEFLGKILGKAMFEGILVDIPFATFFLSKLKEKHNYLHDLPSLDPELYRNLLSLKHYDGDVSQLGLYFVSENNEYGEQKEEEMLPGGRDMQVTNENVIKFIHLMANHHLNSQIRNQSSYFLRGFRQLIQSDWLDMFNEHELQLLISGSTEGMDVDGLRSNVHYAGGYSEDHPI

Protein Length: 523

Fln nts: ATATGGTGACATCTCTGGTTTTGGTGATAGTACTTTTACTGAAGGGCCATCTGTAAAAGAAGCAGCAGCTGTTACTGCACTTTGTGCATTTTTGCATGTTTCTATCACAATGTTACCCCTTGAGAATGTCATGACTGGACTTGCATATACAACTGAACTCGTCCCTACTCTTTGGCACTACATGAAACGGTGTCACTTGAGCCAAAGGTGGCCATCTATGGAGGCTTTAGCAGAATTTTTCCCAGGAGATGCTCCGGGTTGGTTGTTGCCTCTTTCTGTTTTCTGCCCATTGTACAGGCATATGTTGATGATTATTGATAATGAGGAGTTCTACGAGCAACAGAAGCCTCTTCCATTGCAAGATGTCAAGGCTTTAGTTATCATTTTAAAAGAGGCATTATGGCAGCTGCTATGGGTGATCCCCTCTAAGACTTCTGCACCTCAGAAGACTGTTCATTTTGGATCAAATCAAAAGAGATTTCCATTACAATCTATCCGAGAGAGAGTCAGCACAGTAGCAGCTGAACTCTTGGCACAGTTGCAGGATTGGAATTGTAGGAGAGAATTTACATCACCAAATGATTTTCATGCTCGTGATGCAGTTGATGGAATGTTCTATGCTCAGGCTGGAAGTGAAAATTCAAGAGCCCATGAGCTACTGAAACGAGCACCATTCTTAGTGCCATTTACAAACAGGGTTCAAATTTATACTTCTCAGTTAGCTGCAGCCAGACAACAAAACAGTTTTCACACACCCTTTGTACGGCACCGAATCAGGATAAGGCGGAATCGGGCTGTTGAGGATGCCTTCACTGAACTAAATGGATTGACAGGAGAAGAACTTAGGGGAATGATTCGTGTAATATTTGTGAATGAATTTGGAGTTGAAGAGCCTGGTGTTGATGGCGGTGGTATTTTCAAAGATTTTATGGAGAACATAACAAAAACAGCCTATGAGATACAGTATGGACTTTTCAAGGAAACTGCTGATCATCTTCTCTATCCAAATCCTGCATCAGGCACAATACATCCTGAACATCTCCAATATTTTGAGTTCCTTGGAAAAATTCTTGGAAAGGCAATGTTTGAAGGGATTTTAGTTGACATACCATTTGCCACATTCTTTTTGAGCAAGCTCAAAGAAAAGCATAACTATTTACACGATTTGCCTTCTTTGGATCCTGAGCTTTATCGAAATCTTTTGTCCCTAAAGCATTATGATGGTGATGTTTCCCAACTGGGGCTCTATTTTGTCAGTGAAAATAATGAGTATGGTGAACAGAAGGAGGAGGAAATGCTACCAGGTGGAAGGGATATGCAAGTTACTAATGAAAATGTTATCAAGTTCATCCATCTTATGGCAAACCACCACCTGAACAGTCAAATACGCAATCAAAGCTCTTATTTTTTGCGAGGATTTCGACAGCTGATACAGTCTGATTGGTTAGACATGTTTAATGAACATGAACTTCAGCTTCTTATTTCAGGCTCAACAGAGGGTATGGATGTTGATGGCTTACGTTCAAATGTTCATTATGCTGGCGGTTATAGTGAGGATCATCCTATCAT

Fln Alignment:

sp_v1.1_unigene28063___YGDISGFGDSTFTEGPSVKEAAAVTALCAFLHVSITMLPLENVMTGLAYTTELVPTLWHYMKRCHLSQRWPSMEALAEFFPGDAPGWLLPLSVFCPLYRHMLMIIDNEEFYEQQKPLPLQDVKALVIILKEALWQLLWVIPSKTSAPQKTVHFGSNQKRFPLQSIRERVSTVAAELLAQLQDWNCRREFTSPNDFHARDAVDGMFYAQAGSENSRAHELLKRAPFLVPFTNRVQIYTSQLAAARQQNSFHTPFVXXXXXXXXXXAVEDAFTELNGLTGEELRGMIRVIFVNEFGVEEPGVDGGGIFKDFMENITKTAYEIQYGLFKETADHLLYPNPASGTIHPEHLQYFEFLGKILGKAMFEGILVDIPFATFFLSKLKEKHNYLHDLPSLDPELYRNLLSLKHYDGDVSQLGLYFVSXXXXXXXXXXXXMLPGGRDMQVTNENVIKFIHLMANHHLNSQIRNQSSYFLRGFRQLIQSDWLDMFNEHELQLLISGSTEGMDVDGLRSNVHYAGGYSEDHPI
B8LKQ9_______________YGDISGFGDSTSIEGPSEKEAAAVTALCAFLHVSITMLPLENVMTGLAYTTELVPTLWHYMKRCHLSQRWPSMEALAAFFPGDAPGWLLPLSVFCPLYRHMLMIIDNEEFYEQQKPLSLQDVKALVIILKEALWQLLWVIPSKTSTPQKPVHSGSNQKRFPLQSIRERVSTLAAELLAQLQDWNCRREFTSPNDFHARDAVDGMFYAQAGSENSRAHELLKRAPFLVPFTNRVQIYTSQLAAARQQNSFHTPFVRHRIRIRRNRAVEDAFSELNGLTGEELRGMIRVIFVNEFGVEEPGVDGGGIFKDFMENITKTAFDIQYGLFKETADHLLYPNPASGTIHPEHLQYFEFLGKILGKAMFEGILVDIPFATFFLSKLKEKHNYLHDLPSLDPELYRSLLSLKHYDGDVSELGLYFVSENNEYGEQKEEEMLPGGKDMQVTNENVIKFIHLMANHHLNSQIRNQSSYFLRGFQQLIQSDWLNMFNEHELQLLISGSTEGMDVDGLRSNVHYAGGYSEDHPV

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
1492		88		11	0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain