SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene28058

Length: 306 nt

Origin of reads: Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene28058
AGAAGTCATTGAGACTGCTGTGAGAGGAACTCTGAATGTTCTCAAGTCCTGCGCAGCCACTAAAAGTGTAAGGCGCGTGGTTTACACTTCATCTTCAAGTGCCGCATCTTTTCTAGAGAAGCCAGTGGCAATCATCGATGAATCATGCTGGAGCTCAGTAGATCTCATCAGACAAAATAAACCCCCGGTTGGATGTATTATGTGTCAAAAACCCTGGCAGACCAAGCTGCTCTGCAGTTTGCTAAAGAAAACAAAATGGAATTGGTCAGTATCGTCCCAGCCACAGTTGCGGGCCCTTGGCTAACA

Ace file of the UniGene sp_v1.1_unigene28058

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Dihydroflavonol 4-reductase n=2 Tax=Populus RepID=B9GRL5_POPTR	-	-	1.0e-17	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	49%
Blast2go	dihydroflavonol 4-reductase	-	-	2.60653e-18	73%

Source	InterPros	Term	Type	e value	Identity
Blast2go	3-beta hydroxysteroid dehydrogenase/isomerase	IPR002225	-	2.60653e-18	73%
Blast2go	NAD(P)-binding domain	IPR016040	-	2.60653e-18	73%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NVE3

Fln msg: Separated hits, possible frame ERROR between 181 and 187, Distance to subject end: 132 aas, your sequence is shorter than subject: 102 - 419

Fln protein: EVIETAVRGTLNVLKSCAATKSVRRVVYTSSSSAASFLEKPVAIIDESCWSSVDLIRQNxxxGWMYYVSKTLADQAALQFAKENKMELVSIVPATVAGPWLT

Protein Length: 103

Fln nts: AGAAGTCATTGAGACTGCTGTGAGAGGAACTCTGAATGTTCTCAAGTCCTGCGCAGCCACTAAAAGTGTAAGGCGCGTGGTTTACACTTCATCTTCAAGTGCCGCATCTTTTCTAGAGAAGCCAGTGGCAATCATCGATGAATCATGCTGGAGCTCAGTAGATCTCATCAGACAAAATAAxxxxxxCGGTTGGATGTATTATGTGTCAAAAACCCTGGCAGACCAAGCTGCTCTGCAGTTTGCTAAAGAAAACAAAATGGAATTGGTCAGTATCGTCCCAGCCACAGTTGCGGGCCCTTGGCTAACA

Fln Alignment:

sp_v1.1_unigene28058___EVIETAVRGTLNVLKSCAATKSVRRVVYTXXXXXXXF---LEKPVAIIDESCWSSVDLIRQNKxxGWMYYVSKTLADQAALQFAKENKMELVSIVPATVAGPWL
A9NVE3_______________DIIKPTVNGVLNVMKSCAKAKSVKRVVFTSSAGTVNFTDDFQTPGKVFDESCWTNVDLCRKVKxxGWMYFVSKTLAEKAAWDFAEENKIDLLTVIPTLVVGPFI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain