SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene28054

Length: 1002 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene28054

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Stromal membrane-associated protein, putative n=1 Tax=Ricinus communis RepID=B9SYH5_RICCO	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	55%
Blast2go	stromal membrane-associated	-	-	79%

Source	GOs	Term	Type	Identity
Blast2go	activation of ARF GTPase activity	GO:0032857	Biological Process	79%
Blast2go	floral organ abscission	GO:0010227	Biological Process	79%
Blast2go	cytosol	GO:0005829	Cellular Component	79%
Blast2go	endosome	GO:0005768	Cellular Component	79%
Blast2go	trans-Golgi network	GO:0005802	Cellular Component	79%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Arf GTPase activating protein	IPR001164	-	0.0	79%

Full-Lengther Next Prediction

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
132			50	50	1.0
225		90		10	0.90298
240		20		80	0.999996
759			33	66	0.997452
953		87	12		0.992554
954	87		12		0.992554
996		71		28	1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
245	263	ATAAAA ATAAAA ATAAAA A	19

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain