SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene28041

Length: 1313 nt

Origin of reads: Biogeco_2 Uagpf

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene28041 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Senescence-associated protein n=1 Tax=Elaeis guineensis RepID=B3TLS7_ELAGV	-	-	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	84%
Blast2go	senescence-associated protein	-	-	78%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	78%

Source	InterPros	Term	Type	Identity
Blast2go	Tetraspanin, subgroup	IPR000301	-	78%
Blast2go	Tetraspanin	IPR018499	-	78%
Blast2go	Tetraspanin, conserved site	IPR018503	-	78%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NRM9

Fln msg:

Fln protein: MVRFSNNVIGILNFITFVLSIPILGAGIWLANRASTDCEKFLEKPVIAIGVFLMLVSIAGLIGACCRVSWLLWVYLLAMFLLILLLFCFTVFAFVVTNKGVGEVVSNRGYKEYRLGDYSHWLQKRVDNTANWKKIRSCIMDAKVCQSLADDSKSKVAATFFQENLSPIQSCGFTYVSPIDWTGTPNTTSDVDCSTWSNNSTQLCYDCNSCKAGVLANLKHDWRKVAVVNIVMLIFLIIVYSVGCCAFRNNRSDNSYGKGYL*

Protein Length: 263

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGAATTAACTCTCCGATCTTGATTTTGGGTCATAGGATCGAGTCGTATAAGTGTCAAGAGGTAGTAGTATCTTGATCCTCGTCTCTGCTTTACTTTTCACAGGATCGAACCGCAGTGAGTAACTTCGGAAGTGTGTTCTTCTACCTTTGCATTCGTTCTGCCTCGGATCTGTTCTTGGAAAA_-_ATGGTTCGTTTCAGCAACAATGTAATCGGAATCCTTAACTTCATCACGTTTGTGCTGTCGATCCCGATTCTGGGAGCCGGGATATGGCTGGCCAACCGTGCAAGCACCGACTGTGAGAAGTTTCTTGAAAAGCCGGTGATTGCTATCGGGGTTTTCCTCATGCTGGTCTCCATCGCTGGCCTGATAGGGGCCTGCTGCAGGGTCTCATGGCTGCTGTGGGTGTATCTTTTGGCCATGTTCTTGCTTATACTTCTGCTCTTTTGCTTCACGGTCTTTGCGTTCGTGGTGACCAACAAGGGCGTGGGGGAAGTGGTTTCGAACCGGGGATACAAAGAATACCGACTGGGAGACTATTCTCACTGGCTTCAGAAGCGCGTTGACAATACTGCCAACTGGAAAAAGATCAGGAGCTGCATTATGGATGCCAAGGTCTGCCAAAGCCTTGCAGACGACAGCAAGAGCAAGGTCGCAGCTACTTTCTTCCAGGAAAATTTATCACCTATCCAGTCGTGCGGCTTCACCTATGTGAGCCCGATTGACTGGACCGGTACCCCGAACACCACGTCTGATGTTGACTGTAGCACTTGGAGCAACAACTCGACCCAGTTGTGCTATGACTGCAACTCATGCAAGGCCGGGGTTCTTGCAAACCTGAAGCACGACTGGCGAAAGGTGGCGGTTGTGAATATAGTGATGCTTATCTTCCTCATCATCGTCTACAGCGTCGGCTGCTGCGCCTTCAGGAACAATAGGAGCGATAACAGTTATGGGAAGGGCTATCTCTAA___AATAGCATATCTTTTTTTCATAGACAGGGGCACAGACAGAGACACAGAAGATCATTTCATGTTTAGATCGGATTTTCCTGTATAGTAGCTATTTTTTCATTTGTGTTGTTATTATTATAGTTTATGATGAGCATACGGGAGATGTACTGTCCCAATCTTCAGACATTTAATTAGAGACACTGATACTGCCCCAATATTCAGAAATCTAATTAGTCCAGTGATGGTTTTACTGGTTTTCGTATAAAAATTCGCTTTTAACAGTTGGAATTGTGCCCTCATTTTTTTTTTTTTTTCAGATGTTTCATTTTGAAACCAAGATCC

Fln Alignment:

sp_v1.1_unigene28041___MVRFSNNVIGILNFITFVLSIPILGAGIWLANRASTDCEKFLEKPVIAIGVFLMLVSIAGLIGACCRVSWLLWVYXXXXXXXXXXXXXXXXFAFVVTNKGVGEVVSNRGYKEYRLGDYSHWLQKRVDNTANWKKIRSCIMDAKVCQSLADDSKSKVAATFFQENLSPIQS--------CGFTYVSPIDWTGTPNTTSDVDCSTWSNNSTQLCYDCNSCKAGVLANLKHDWRKVAVVNIVMLIFLIIVYSVGCCAFRNNRSDNSYGKGY
A9NRM9_______________MVRFSNNVIGILNFITFVLSIPILGGGIWLANRASTDCEKFLEKPVIAIGVFLMVVSIAGLIGACCRVSWLLWVYLLAMFLLIVLLFCFTVFAFVVTNKGVGEVVSNRGYKEYRLGDYSNWLQKRVENTANWKRIRSCIIDAKVCKSLADESVNKAADAFYKENLSPIQSGCCKPPTSCGFTYVSPIMWNGTATDTSNTDCNSWNNTQSQLCYDCNSCKAGVLQNLKHDWRKVAAVNIVMLIFLVIVYSVGCCAFRNNRHDNSYGKGY

SNPs (tot: 4)

Position	A %	G %	T %	Probability
1197	33	66		0.997452
1198	33		66	0.997452
1199	33	33		0.997753
1244	66	33		0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain