SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene28023

Length: 1458 nt

Origin of reads: Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene28023

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	41%
Blast2go	atp binding	-	-	80%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Protein kinase-like domain	IPR011009	-	0.0	80%
Blast2go	Serine/threonine-protein kinase-like domain	IPR017442	-	0.0	80%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: B8LLL8

Fln msg: No stop codon before M and low homology subject, your sequence is longer than subject: 313 - 245

Fln protein: MSIDSGRKKTPTKDWWWRQQDSSGEFSVKDYVMEWIGTEIKKERPSGSERDLNPVGRRKKPEKRPRREKSFEWWVTLAEEDESEEPKKKEKSKNRERREWWREEFCEELSQKSNRSSRRVNSRSRSRDWFRDEPLPLHHHSRDWGSGDVMRSGVSSTPSMRGTVCYVAPEYGGGGALSERGDVYSFGVLLLVIISGRRPLQVMASPMTHFERANLISWARHLARSGNVLDLVDATLGEDYDKSQALLCITVALLCLQRSPAARPAMTEVVKILSGEVEAPSLPFEFSPSPPYGFPFRSRRKASCRASPAIHA*

Protein Length: 314

Fln nts: TTTTTCAAGGGATGATGATGATAAA_-_ATGAGCATCGATAGTGGGAGAAAAAAGACTCCAACAAAGGATTGGTGGTGGAGGCAGCAGGACAGCAGTGGGGAATTCAGCGTTAAGGACTATGTTATGGAGTGGATTGGTACTGAAATTAAAAAGGAGAGGCCCAGCGGCAGCGAACGGGATTTGAACCCGGTTGGGAGGAGGAAGAAGCCAGAGAAGAGGCCGAGGAGGGAAAAAAGCTTCGAATGGTGGGTGACTCTTGCAGAGGAGGACGAGAGTGAAGAGCCCAAGAAGAAGGAGAAATCGAAGAACAGAGAGCGCAGGGAATGGTGGAGGGAAGAATTTTGCGAAGAATTGAGCCAGAAGAGCAACCGTAGCAGTAGACGAGTTAATAGCCGAAGCAGAAGCAGAGACTGGTTTCGCGATGAACCTCTTCCCCTCCACCACCATAGTAGGGATTGGGGTAGCGGAGATGTGATGAGAAGCGGAGTGAGCAGCACACCGAGCATGCGAGGCACCGTTTGCTACGTTGCTCCCGAGTATGGCGGTGGCGGTGCGCTCTCAGAGAGGGGCGATGTTTACAGTTTTGGGGTTCTTCTGTTGGTAATTATCTCCGGCCGGAGGCCTCTGCAGGTTATGGCGTCTCCGATGACACATTTCGAGAGAGCGAATCTCATATCGTGGGCCAGACACTTGGCTCGTTCGGGCAACGTCTTGGACCTCGTGGACGCCACGCTTGGTGAGGACTACGATAAAAGCCAGGCTCTGCTTTGCATCACCGTTGCTCTTCTCTGCCTGCAGAGATCGCCAGCAGCGAGACCCGCCATGACTGAGGTGGTCAAGATACTGTCAGGGGAAGTGGAGGCCCCGTCGCTTCCTTTCGAATTTTCTCCTTCGCCACCATATGGGTTTCCCTTTAGGTCGCGCAGGAAGGCCTCTTGCAGGGCTTCCCCTGCAATTCATGCATAAATGAGGCCTTCCCCTGCAATTCATGCATAAATTTTGTAGTGCTTATGTTTTTTTGGTGACTGCATCCATAAATTATTCCCATTCCCATTCCCATTCCCATTGTCACTTTTTTTGCTCTACAGGGCATGTACAATACATCTATTGGCAATACCCTGAGTCCGACTCCGAGCTGACTTTGTTCGAATGCCCAGATGGATTTTCAAAACTTTCATAGGAGTTACTGTAGAGACCGTGGGGTCTGGACTGCAAGCTTAGCTTTCATATTAATTTCACTTACAGATCTAATGTCCTTGAGCCGTAATAATGAATATATTCGTCCTTCTCATCGAAGCAATGTATATATATTTATTTTTAGCAGTATTGTCATAAAGGCATCGTACAGGGTAAGTTATTGCGAATTGCCAAGCATGGCTGTAGCCTTCAAACACGTTTTGAGAGTAGGTGAAACCCATCCTGGCAAGTAATCTCACATCAATTCTTCTGTCTGGCTTGCA

Fln Alignment:

sp_v1.1_unigene28023___GTVCYVAPEYGGGGALSERGDVYSFGVLLLVIISGRRPLQVMASPMTHFERANLISWARHLARSGNVLDLVDATLGEDYDKSQALLCITVALLCLQRSPAARPAMTEVVKILSGEVE
B8LLL8_______________GTIGYTAPEYAVHGQLTEKADVYSYGIVVLEIVSGRKSVNARLDASMQL----LLEWAWNQFQQDQVLDIVDSSLEGQYPREQVLRVIRIALLCTQGSWALRPAMSEVVSMLTNNSE

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
1179	75			25	0.996473
1183	75			25	0.996473
1186		25		75	0.996473
1190		25	75		0.996473
1191	25			75	0.996473
1219			20	80	0.995493
1221	80	20			0.995493
1225			20	80	0.995493
1226	20			80	0.995493
1228	80	20			0.995493
1232			20	80	0.995493
1233	80		20		0.995493
1234	80	20			0.995493
1236			20	80	0.995493

SSRs (tot: 2)

Start position	End position	Sequence	Length
11	22	GAT GAT GAT GAT	12
1039	1065	ATTCCC ATTCCC ATTCCC ATTCCC ATT	27

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain