SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene28014

Length: 977 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene28014

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Serine/threonine-protein kinase AFC2 n=3 Tax=Arabidopsis RepID=AFC2_ARATH	-	-	4.00001e-40	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	87%
Blast2go	protein kinase	-	-	0.0	70%

Source	GOs	Term	Type	Identity
Blast2go	mRNA processing	GO:0006397	Biological Process	70%
Blast2go	protein binding	GO:0005515	Molecular Function	70%
Blast2go	protein kinase activity	GO:0004672	Molecular Function	70%

Source	InterPros	Term	Type	Identity
Blast2go	Protein kinase, catalytic domain	IPR000719	-	70%
Blast2go	Protein kinase-like domain	IPR011009	-	70%
Blast2go	Serine/threonine-protein kinase-like domain	IPR017442	-	70%

Full-Lengther Next Prediction

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
312	87	12			0.992554
314	87			12	0.992554
315	87	12			0.992554
316	87		12		0.992554
320	87	12			0.992554
321		12	87		0.992554
322			87	12	0.992554
328	87	12			0.992554
329		87		12	0.992554
333	12	87			0.992554
464		83		16	0.994512
686			77	11	0.968132
689	12			87	0.992554
692		12	87		0.992554
694	87		12		0.992554
702	87			12	0.992554
703		12		87	0.992554
705		87		12	0.992554
706	87			12	0.992554
707		12	87		0.992554
713			12	87	0.992554
714		87	12		0.992554
716			87	12	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain