SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene28006

Length: 2228 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene28006
TGGTTCTACCCACCGGCCCCCGGGATCGAACTGGGGAGGAGCCTGAGTATGGTGGTGGGGGTTTGGGGGGTGGATTCAAGGATTATGGGCGCAACAGAGATAGAGCAGCTTTTGGCAGTGGCAGGGATGAGGGGAGGAAGGGTTACGGGGGTTTTGATGATGATAGAAGACAGGGGCAGCAGTCTAGAGGCGGCGGTGATAGGGATATGCCTTCCAGGGCTGACGAGGCGGATAATTGGGGCAGTGCGAAGAAATCCTTGCCACCTATGTCGTCCCCGGGAAGTTCCTTCGAACGGCGGAGATATGACGGGGATCGATTTGAAGGCGGTTCTAAAGGATTTGATGGCGGTTCCAGAGGATTTGATGGTGGTTCTAGAGCTGATGAAGCTGATAATTGGGGCAGTGGAAAGACTTTTGTTCCCAGCGCACCGTCAGATCGGAAGTCCATGGGCTTTGGATCTAGCTATAATCCGGCGTCGGATTCGGACAGGTGGGGTAGCAGGAGCTCGTTTAAAGAATCAAACAGAGATGACGACCGTCTTGCTGAACGGCGTCGGCTCGTTTTGAATCCTCCAAGAGCTGCGGCATTACCTGCTTTGAGTCCAGGTGTTGATTCTGATGCGCCAAAGACAACGAAGCCAAGTCCTTTCGGATCTGCACGACCTCGTGAAGAGGTTCTGGCTGAGAAGAATCCAGAATGGAAAAAACATGAAAATGATATCGAAGAGGGAGCTGAGAGAAGGCATTCCAGCAGGCCTACTAGTGCACATTCTAGCCGTCCTGGTAGTCCCGATTCACAATCTGAAGTGGCCCCGAGGCCTCGACCAAAATTGAATCCATTTGGAGATGCAAAACCGAGGGAAGAAGTGTTGAAAGGGAAGGGATTGGATTATCGCAAGATGGAATTCGATCTAGATCACCGTCGCGTTGAAAGACCTGAGACAGAGGATGAGGTTAAATTGAAGGAAGAAATAAATGCATTGAAAGAACTTGCTAAACAGAATAATGATGGTAAAGTCGCAGAAAATGGAAATGCTTCAGGTGAAGAAAATCAGCAGACATTGTCTGAAACAATAATGAAGAAAGAAAAAGAGTTGGAGCTTTTGATTACAGAATTGGATGATAAAATCCGTTTTGATAATAGAAGGGGTGGTGATAGACCAGGTTCAACAGGGGGACGGCCTTTTGAATCTTTTGAGAGACCTGGGTCACAATCAGGGCGCTTGGACAATGGAAAGAATTTTGAGTCATTTGAGAGACCCAAATCTCGTGGCAGTGAAAGTGGAGGTGCAGATGTATGGACAAGGTCTGGTGAAGAAAGGAGAGGGATGTATGGAAGCAGAGAGAGGACTTTTACCAATCGAGAGAGGCCCGATTCAAGAAATAGATGGTGAACTCTTGGGTCTCTGCATCAAGAACTCTGGAAAATGCAGATATCTGGACCTCTTCGGGGCAAAATAAGTGATTATGCATTACCCAGTTCTTCTTCGGCATCTTTGGAATTTTTGCACTATATTATCTGAGAAATGGTTTCAACAATTTATAATTCAAATTATTCATATAACAATGTCTTATTCATCACCCTCAGGTGCTGTAACACTTGAATAGGTCATTTTGGTCAAGTTCTCATTGCTTTAAAGTTTAACCTCCTATTGGAATTTTCAGACTCCGAGAAGATCTACCTCTACCTTTGGGATTTTTTGAGGTGGCGTTTGCTTGAATGGCATGAGCTTTGATCTCAATGGATTGCAGTGAAGACTGTCAATGGGGGGCAGTTCATTGGCAGTTGGAGCTCATGATTTTGCATGTAGAAATTCTAGTATTTGTTTTCATTAGTCTTGTGGTGCCAGCTTTGTCTGGTTACCTAAACTATGAGATTGCTTCACTGGCTTAATATGGGCGCCAATAATCATGATGCAATATCAATTCAGTGCCCAAAATGTTGCTGTGATTGACAGTCATTAGATAGATTCATGTTTTAAGATATTGATTGACAGTTTTGTAGACTTTGTTTAGTGTTTTTATGCTGTGTATAGTTACAGCATCTTGTTTTTGTCATACACTCGAGCTTCTGAATTGTACTAAGCACTCCAGAAGTTCAGAAACTGGAAATGGTCCCCATGATGAAGCTTATAGAAATTTATTATATGCTACATCATGGCTATAAACTACATTTAGAGGCTCCTCTTGTAATCCAATTCTTGTAATATTGAGTAATTTGGGCTTTT

Ace file of the UniGene sp_v1.1_unigene28006

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Eukaryotic initiation factor 4B n=3 Tax=Arabidopsis RepID=Q9LIN5_ARATH	-	-	34%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	45%
Blast2go	eukaryotic initiation factor 4b	-	-	52%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Plant specific eukaryotic initiation factor 4B	IPR010433	-	0.0	52%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKF3

Fln msg: your sequence is shorter than subject: 464 - 567

Fln protein: VLPTGPRDRTGEEPEYGGGGLGGGFKDYGRNRDRAAFGSGRDEGRKGYGGFDDDRRQGQQSRGGGDRDMPSRADEADNWGSAKKSLPPMSSPGSSFERRRYDGDRFEGGSKGFDGGSRGFDGGSRADEADNWGSGKTFVPSAPSDRKSMGFGSSYNPASDSDRWGSRSSFKESNRDDDRLAERRRLVLNPPRAAALPALSPGVDSDAPKTTKPSPFGSARPREEVLAEKNPEWKKHENDIEEGAERRHSSRPTSAHSSRPGSPDSQSEVAPRPRPKLNPFGDAKPREEVLKGKGLDYRKMEFDLDHRRVERPETEDEVKLKEEINALKELAKQNNDGKVAENGNASGEENQQTLSETIMKKEKELELLITELDDKIRFDNRRGGDRPGSTGGRPFESFERPGSQSGRLDNGKNFESFERPKSRGSESGGADVWTRSGEERRGMYGSRERTFTNRERPDSRNRW*

Protein Length: 465

Fln nts: TGGTTCTACCCACCGGCCCCCGGGATCGAACTGGGGAGGAGCCTGAGTATGGTGGTGGGGGTTTGGGGGGTGGATTCAAGGATTATGGGCGCAACAGAGATAGAGCAGCTTTTGGCAGTGGCAGGGATGAGGGGAGGAAGGGTTACGGGGGTTTTGATGATGATAGAAGACAGGGGCAGCAGTCTAGAGGCGGCGGTGATAGGGATATGCCTTCCAGGGCTGACGAGGCGGATAATTGGGGCAGTGCGAAGAAATCCTTGCCACCTATGTCGTCCCCGGGAAGTTCCTTCGAACGGCGGAGATATGACGGGGATCGATTTGAAGGCGGTTCTAAAGGATTTGATGGCGGTTCCAGAGGATTTGATGGTGGTTCTAGAGCTGATGAAGCTGATAATTGGGGCAGTGGAAAGACTTTTGTTCCCAGCGCACCGTCAGATCGGAAGTCCATGGGCTTTGGATCTAGCTATAATCCGGCGTCGGATTCGGACAGGTGGGGTAGCAGGAGCTCGTTTAAAGAATCAAACAGAGATGACGACCGTCTTGCTGAACGGCGTCGGCTCGTTTTGAATCCTCCAAGAGCTGCGGCATTACCTGCTTTGAGTCCAGGTGTTGATTCTGATGCGCCAAAGACAACGAAGCCAAGTCCTTTCGGATCTGCACGACCTCGTGAAGAGGTTCTGGCTGAGAAGAATCCAGAATGGAAAAAACATGAAAATGATATCGAAGAGGGAGCTGAGAGAAGGCATTCCAGCAGGCCTACTAGTGCACATTCTAGCCGTCCTGGTAGTCCCGATTCACAATCTGAAGTGGCCCCGAGGCCTCGACCAAAATTGAATCCATTTGGAGATGCAAAACCGAGGGAAGAAGTGTTGAAAGGGAAGGGATTGGATTATCGCAAGATGGAATTCGATCTAGATCACCGTCGCGTTGAAAGACCTGAGACAGAGGATGAGGTTAAATTGAAGGAAGAAATAAATGCATTGAAAGAACTTGCTAAACAGAATAATGATGGTAAAGTCGCAGAAAATGGAAATGCTTCAGGTGAAGAAAATCAGCAGACATTGTCTGAAACAATAATGAAGAAAGAAAAAGAGTTGGAGCTTTTGATTACAGAATTGGATGATAAAATCCGTTTTGATAATAGAAGGGGTGGTGATAGACCAGGTTCAACAGGGGGACGGCCTTTTGAATCTTTTGAGAGACCTGGGTCACAATCAGGGCGCTTGGACAATGGAAAGAATTTTGAGTCATTTGAGAGACCCAAATCTCGTGGCAGTGAAAGTGGAGGTGCAGATGTATGGACAAGGTCTGGTGAAGAAAGGAGAGGGATGTATGGAAGCAGAGAGAGGACTTTTACCAATCGAGAGAGGCCCGATTCAAGAAATAGATGGTGA___ACTCTTGGGTCTCTGCATCAAGAACTCTGGAAAATGCAGATATCTGGACCTCTTCGGGGCAAAATAAGTGATTATGCATTACCCAGTTCTTCTTCGGCATCTTTGGAATTTTTGCACTATATTATCTGAGAAATGGTTTCAACAATTTATAATTCAAATTATTCATATAACAATGTCTTATTCATCACCCTCAGGTGCTGTAACACTTGAATAGGTCATTTTGGTCAAGTTCTCATTGCTTTAAAGTTTAACCTCCTATTGGAATTTTCAGACTCCGAGAAGATCTACCTCTACCTTTGGGATTTTTTGAGGTGGCGTTTGCTTGAATGGCATGAGCTTTGATCTCAATGGATTGCAGTGAAGACTGTCAATGGGGGGCAGTTCATTGGCAGTTGGAGCTCATGATTTTGCATGTAGAAATTCTAGTATTTGTTTTCATTAGTCTTGTGGTGCCAGCTTTGTCTGGTTACCTAAACTATGAGATTGCTTCACTGGCTTAATATGGGCGCCAATAATCATGATGCAATATCAATTCAGTGCCCAAAATGTTGCTGTGATTGACAGTCATTAGATAGATTCATGTTTTAAGATATTGATTGACAGTTTTGTAGACTTTGTTTAGTGTTTTTATGCTGTGTATAGTTACAGCATCTTGTTTTTGTCATACACTCGAGCTTCTGAATTGTACTAAGCACTCCAGAAGTTCAGAAACTGGAAATGGTCCCCATGATGAAGCTTATAGAAATTTATTATATGCTACATCATGGCTATAAACTACATTTAGAGGCTCCTCTTGTAATCCAATTCTTGTAATATTGAGTAATTTGGGCTTTT

Fln Alignment:

sp_v1.1_unigene28006___VLPTGPRDRTXXXXXXXXXXXXXX-FKDYGRNRDRAAFGSG-----RDEGRKXXXXXXXXXXXXXXXXXXXXXXM----PSRADEADNWGSAKKSLPPMSSPGSSFER---RRYDGDXXXXXXXXXXXXXXXXXXXXXXXEADNWGSGKTFVPSAPSDRKSMGFGSSYNPASDSDRWGSRSSFKESNXXXXXXXXXXXXXXXXXXXXXXXXXXXGVDSDAPKTT----KPSPFGSARPREEVLAEKNPEWKKHENDIEEGAERRHSSRPTSAHSSRPGSPDSQSEVAPRPRPKLNPFGDAKPREEVLKGKGLDYRKMEFDLDHRRVERPETEDEVKLKEEINALKELAKQNNDGKVAENGNASGEENQQTLSET---IMXXXXXXXXXXXXXXXXXRFDNRRGGDRPGSTGGRPFESFERPGSQSGRLDNGKNFESFERPKSRGSESG-GADVWTRSGEERRGMYGSRERTFTNRERPDSRNRW
B8LKF3_______________MLPTGPRERSADEPDYGGSGRLGGGFRDYGKRVGGGGGGGGGGGGFRDEGDGQWGSNRRPFGGGFDDDRKPQTRVSDFEPSRADEADNWASTKKVAPP--PPVNSFNRSSRERYDAGGQTSRYDASGQGSRAD-------EADNWAAGKRL---ESSDHRSGSFGSM-----NAERWGGRRTEGFAFSDRDSDRARPRLVLDPPSRPRNESLPAPLLSDAPQVDASKPKPNPFGFARPREEVLTKRGEDWKKLDSEIES----RSSSRPTSAHSSRPQSPTLNDGAPPQSRPKVNPFGDAKPREVLLEKMGKDWRKMDFELEHRGTNRSETEEEWKLKEEVNFLKELVKKSAENEAQVDGLALGEQDMEQMQSTMKELVLKEKQLEQLTRDLDDKVRFGKRGGDSRPGSAAGRPFEYLERPGSRSGLSDGGRSHDSLERPRSRGGEGRVVADVWMSSNEGQRGVHVDRERSFQQRNRLNLRERW

SNPs (tot: 58)

Position	A %	C %	G %	T %	Probability
662	73		26		1.0
745		22	77		0.999999
815		28		71	1.0
898	14		85		0.993533
899		85		14	0.993533
901	85			14	0.993533
902			85	14	0.993533
905		14	85		0.993533
906			85	14	0.993533
907	85			14	0.993533
908	85			14	0.993533
914		14		85	0.993533
918		14	85		0.993533
921		85	14		0.993533
924	14	85			0.993533
925			85	14	0.993533
927	14	85			0.993533
930			85	14	0.993533
935	85	14			0.993533
1012	75		25		0.996473
1013			25	75	0.996473
1253	87			12	0.992554
1286		12		87	0.992554
1332	88		11		0.923564
1353	88		11		0.923564
1380		14		85	0.993533
1754	88	11			0.999952
1757		11	88		0.999952
1758	88		11		0.999952
1759	88			11	0.999952
1763		12		87	0.999964
1764			87	12	0.999964
1766		87	12		0.999964
1767	87		12		0.999964
1768	87	12			0.999964
1771			87	12	0.999964
1772		12	87		0.999964
1773	12		87		0.999964
1774		12	87		0.999964
1775			87	12	0.999964
1782	88		11		0.999937
1784		11		88	0.999937
1788	89	10			0.999919
1789		10	89		0.999919
1801		10	89		0.999919
1805		10		89	0.999919
1831		14		85	1.0
1832			14	85	1.0
1835	85		14		1.0
1837			14	85	1.0
1840		14		85	1.0
1847		13	86		1.0
1850		85		14	1.0
1856	11			88	1.0
1858	3		88		0.998862
2057			10	85	0.999793
2058			90	10	0.999898
2166		83		16	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain