SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene27986

Length: 1825 nt

Origin of reads: Biogeco_1 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene27986

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Tubulin alpha-2/alpha-4 chain n=118 Tax=Eukaryota RepID=TBA2_ARATH	-	-	80%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	alpha tubulin 1	-	-	92%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PT17

Fln msg:

Fln protein: MREIINIHVGQAGIQVGNTCWELFCLEHGIQPDGYPSSDGIINGGTYAHSAFFSETRAGKHVPRALFIDLEPTVIDEVRTGPYRQLFHPEQLISGKEDAANNFARGHYTVGKDVLENCLDRIRKLCDNCTSLQGFLVFNAVGGGTGSGLGSLLLERLSVEYGRKPKLGFNIYPSPQVSTAVVEPYNSVLSTHSLLEHTNVAVVLDNEAIYDICKRCLDIERPTYKNLNRLISQVISSLTSSLRFQGALNVDINEFQTNLVPFPRIHFMLSSYAPVVSKEKAYHEALSVKEITNSVFEANNMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVSMIKTKRAVQFVDWCPTGFKCGINYQPPTVVPGGDLCKVPRAVCMISNNTAVAEVFSRLDHKFDLMFAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYYEVAADDLDDEEVDEDEVY*

Protein Length: 453

Fln nts: AAGGAG_-_ATGAGGGAGATTATAAATATTCATGTTGGGCAGGCTGGAATACAAGTGGGAAACACATGTTGGGAATTATTTTGTTTAGAGCATGGAATTCAACCAGATGGTTATCCCTCTAGTGATGGAATAATAAATGGAGGAACCTATGCGCATAGTGCCTTCTTCAGTGAAACCAGAGCTGGGAAGCATGTTCCCAGAGCTCTGTTTATTGATCTTGAACCAACAGTTATTGATGAGGTTAGGACAGGTCCATACAGGCAGCTTTTTCACCCTGAACAACTTATTTCTGGCAAGGAAGATGCAGCTAACAACTTTGCTCGAGGCCATTATACTGTGGGCAAAGATGTATTGGAGAATTGTCTAGACAGAATAAGGAAGCTCTGTGATAATTGCACCAGTTTGCAAGGATTTTTAGTTTTTAATGCAGTTGGAGGAGGTACTGGATCTGGTTTGGGATCCTTACTCTTGGAACGCCTTTCCGTTGAATATGGACGAAAACCAAAGCTGGGATTTAATATATACCCCTCTCCTCAGGTTTCCACTGCAGTTGTAGAACCATATAACAGTGTATTGTCAACTCATTCTCTCTTGGAGCACACAAATGTAGCAGTTGTTCTGGACAACGAAGCTATTTATGACATATGTAAACGATGTCTAGACATCGAAAGACCTACATACAAAAACTTGAACAGACTGATCTCGCAAGTTATATCGTCATTAACAAGTTCTCTGCGATTTCAAGGAGCCTTAAATGTAGACATAAATGAGTTTCAAACGAACCTTGTTCCCTTTCCTAGAATTCATTTTATGCTTTCATCTTATGCACCAGTAGTGTCTAAAGAGAAAGCCTATCATGAAGCTTTGTCAGTGAAAGAAATAACAAATTCTGTGTTCGAGGCCAACAACATGATGGCTAAATGTGATCCCAGACACGGAAAATACATGGCCTGCTGTCTAATGTATAGAGGAGACGTGGTGCCCAAAGATGTGAATGCAGCAGTTTCAATGATCAAAACAAAACGAGCTGTACAATTCGTAGACTGGTGTCCGACAGGTTTCAAATGTGGAATAAACTATCAACCTCCCACAGTTGTGCCCGGAGGAGACTTATGTAAAGTCCCAAGAGCAGTGTGCATGATCAGCAACAACACAGCAGTTGCAGAGGTGTTCTCCCGTCTTGACCACAAATTCGATCTAATGTTTGCAAAGCGTGCATTTGTACACTGGTATGTTGGTGAAGGCATGGAAGAAGGTGAATTCTCAGAGGCCCGGGAAGACTTGGCTGCTCTTGAAAAAGACTACTACGAAGTGGCTGCAGATGATCTAGATGATGAAGAGGTGGATGAAGATGAAGTTTATTGA___AGACCTTTCCAATATCTCGTTCTTTCTTTCCTCCAGTTTTATCTCTATACATTTTTATTATGTACATTTTGCATTCCTTATTAGATTCATTCCCGTCTCACTTATTTGAAATTTTCAGTGCTCTGCACCTAAAGCAGAATTCGCGAGTTTGTAGAATTGTCTGGATTTGTTGTAGCTGTAACATCAGGGATCACATTATGATCTAGCTACCTTTAGCAGAAATTTTGTTTTATAAGCAATGTCAAAACAAGAGCATCATATGTTGTATCTTTGTTCTGCACCAGAGTCAGCGAGTGTACTTTCTCCCAAATTATTTTAAATTCTAGTATTAATCTTCATCTTCTTATTGAGCACTTCTGTGAGTTGGATTTTCAACTTGTATATGAAGAGGCTCATGGGCTGATTAACTTGCTGTAAATTCTTGGCTGAACCATCTTACAGTAAACAATGTTGGAAATTCTAT

Fln Alignment:

sp_v1.1_unigene27986___MREIINIHVGQAGIQVGNTCWELFCLEHGIQPDGYPSSDGIINGGTYAHSAFFSETRAGKHVPRALFIDLEPTVIDEVRTGPYRQLFHPEQLISGKEDAANNFARGHYTVGKDVLENCLDRIRKLCDNCTSLQGFLVFNAVXXXXXXXXXXXXXXXXXVEYGRKPKLGFNIYPSPQVSTAVVEPYNSVLSTHSLLEHTNVAVVLDNEAIYDICKRCLDIERPTYKNLNRLISQVISSLTSSLRFQGALNVDINEFQTNLVPFPRIHFMLSSYAPVVSKEKAYHEALSVKEITNSVFEANNMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVSMIKTKRAVQFVDWCPTGFKCGINYQPPTVVPGGDLCKVPRAVCMISNNTAVAEVFSRLDHKFDLMFAKRAFVHWYVGEGMEEGEFSEAREDLAALEK
C0PT17_______________MREIINIHVGQAGIQVGNTCWELFCLEHGIQPDGYPSSDGIINGGTYAHSAFFSETGAGKHVPRALFIDLEPTVIDEVRTGPYRQLFHPEQLISGKEDAANNFARGHYTVGKDVLENCLDRIRKLCDNCTSLQGFLVFNAVGGGTGSGLGSLLLERLSVEYGRKPKLGFNIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVVLDNEAIYDICKRCLDIERPTYKNLNRLISQVISSLTSSLRFQGALNVDINEFQTNLVPFPRIHFMLSSYAPVVSKEKAYHEALSVKEITNSVFEASNMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVSMIKTKRAVQFVDWCPTGFKCGINYQPPAVVPGGDLCKVPRAVCMISNNTAVVEVFSRLDHKFDLMFAKRAFVHWYVGEGMEEGEFSEAREDLAALEK

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
741	66		33		0.997452
902	75		25		1.0
955		87		12	0.992554
1167			50	50	1.0
1378	33	66			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain