SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene27961

Length: 1406 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene27961 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Cell division protein ftsH, putative n=1 Tax=Ricinus communis RepID=B9RCV1_RICCO	-	-	60%
FL-Next	sp=ATP-dependent zinc metalloprotease FTSH 6, chloroplastic; Arabidopsis thaliana (Mouse-ear cress).	-	-	26%
Blast2go	protein	-	-	61%

Source	GOs	Term	Type	e value	Identity
Blast2go	hydrolase activity	GO:0016787	Molecular Function	0.0	61%
Blast2go	chloroplast	GO:0009507	Cellular Component	0.0	61%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q1PDW5

Fln msg: your sequence is shorter than subject: 326 - 688

Fln protein: GEDANNLPGWSGAQLAQLIQEAALVAVRHGHDSIVQSDMNKAVDRLTIGPERKGIEQISPFLWRRATAEVGIALASHLLRRLENACVESCNRISIIPCGDTLSRTIFNRLDEEAYIFERRPQLLHRLQVMLGARAAEEVMYGRNTSTISLRYLSDASWLGRKIISIWNLENPMVIHGEAAPWKRTPGFTGPPLNFEGSLYDDYGLYESPLNYNLENDIVLRTEKLVNDMYQNIFTMIHHYHAALAKAVYVVMEMQEITGDDLDVIIDQYPADTPVHLVEEEENPGSLPPRDGIQQMVPLGTSDSSAISWKKTSHEEETLSSKSVN*

Protein Length: 327

Fln nts: GGGGGAGGATGCCAACAACCTGCCAGGATGGTCAGGAGCACAGCTTGCACAGCTTATTCAAGAGGCTGCTTTGGTCGCTGTTAGGCATGGCCATGATTCAATTGTTCAATCTGACATGAATAAGGCAGTTGACAGGCTTACAATTGGGCCAGAGCGTAAAGGTATTGAACAAATATCACCATTTCTCTGGCGGAGGGCAACAGCCGAAGTCGGCATTGCATTGGCATCACATCTTTTGCGGCGCTTGGAGAATGCCTGTGTTGAAAGTTGTAATCGAATATCTATAATTCCTTGTGGTGACACACTTTCACGAACTATTTTTAACCGACTTGATGAGGAGGCTTATATTTTTGAGCGGCGACCCCAACTGCTACATCGATTGCAGGTAATGCTAGGGGCCAGGGCAGCTGAAGAGGTGATGTATGGACGCAATACATCGACAATATCATTGAGATACCTTTCAGATGCATCTTGGCTTGGACGGAAAATCATTTCTATATGGAACTTGGAGAATCCTATGGTTATACATGGAGAAGCAGCTCCCTGGAAACGAACTCCAGGCTTTACTGGTCCACCTTTGAATTTTGAAGGTTCACTATATGATGATTATGGTCTCTATGAAAGTCCTCTCAACTACAATTTGGAAAATGATATTGTTCTCAGGACAGAGAAATTGGTGAATGATATGTACCAGAACATATTTACAATGATACATCATTATCATGCAGCTTTGGCCAAAGCTGTTTACGTTGTCATGGAAATGCAGGAGATCACAGGTGATGACCTTGATGTCATAATTGATCAATATCCAGCAGATACTCCTGTGCATCTTGTAGAAGAAGAGGAAAATCCAGGAAGCTTGCCTCCAAGGGATGGAATTCAGCAAATGGTTCCTTTGGGGACATCGGATTCATCAGCTATATCCTGGAAGAAGACGAGTCATGAAGAAGAGACGCTTAGCTCCAAGAGCGTTAATTAG___GACTTACGTAGTCCTTGCATTGTTATCTGTTTTTCATCTTTTGAACATGCATTGGAAAGCAGATGTGATTGGTTGACTGCCCTCAAAGATAATCTGGAGAGTGAAATGCAGAGTGCAATGAGTGATTATGTGAAGAGAATGGAAGGGCAAGAATTTTGCTAGGAAATTTTCATCTGGGACACGAAGAATTTCGTTGCACTTGTGTCTTGTTACAGGCAAGAGAAAATTGTGCATTTGGAAATGCCATGGTAATTATTGTGCTCATTTTTCAAAATATTGCCTTCTTGTCTAAGATGGAAGAATAGCTTTGTATAGCATATGAAATGTGTTCTAATGTTTAACATCCTTCGTTATGTGCCGAAAGCCTATGTATTGTTAAACTTTTGGCTTCATTGGCTTCTTCCAATGTTGGTGCTGTTATATTTTT

Fln Alignment:

sp_v1.1_unigene27961___ANNLPGWSGXXXXXXXXXXXXXAVRHGHDSIVQSDMNKAVDRLTIGPE-RKGIEQISPFLWRRATAEVGIALASHLLRRLENACVESCNRISIIPCGDTLSRTIFNRLDEEAYIFERRPQLLHRLQVMLGARAAEEVMYGR-NTSTISLRYLSDASWLGRKIISIWNLENPMVIHGEAAPWKRTPGFTGPPLNFEGSLYDDYGLYESPLNYNLENDIVLRTEKLVNDMYQNIFTMIHHYHAALAKAVYVVMEMQEITGDDLDVIIDQYPADTPVH
Q1PDW5_______________AMRTPGFSGADLANLMNEAAILAGRRGKDKITLTEIDDSIDRIVAGMEGTKMIDGKSKAIV--AYHEVGHAICATLTEGHDPV-----QKVTLVPRGQARGLTWF--LPGEDPTLVSKQQLFARIVGGLGGRAAEDVIFGEPEITTGAAGDLQQVTEIARQMVTMFGMS-------EIGPW----ALTDPAVKQNDVVLRM--LARNSMSEKLAEDIDSCVKKIIGDAYEVAKKHVRNNREAIDKLVDVLLEKETLTGDEFRAILSEY-TDQPLN

SNPs (tot: 41)

Position	A %	C %	G %	T %	Probability
369	10	90			0.90298
370			10	90	0.90298
372			11	88	0.923564
373	11	88			0.923564
376	88		11		0.923564
377		12		87	0.992554
379	12	87			0.992554
381	16			83	0.994512
383			16	83	0.994512
387	83	16			0.994512
388	83		16		0.994512
410			80	20	0.995493
411		80	20		0.995493
413	80		20		0.995493
414			80	20	0.995493
418	20			80	0.995493
419	80		20		0.995493
421		20	80		0.995493
422	20			80	0.995493
424	80		20		0.995493
429			20	80	0.995493
431	80	20			0.995493
432			20	80	0.995493
501		25	75		0.996473
502	75	25			0.996473
503		25		75	0.996473
504	25		75		0.996473
506	66	33			0.997452
1331	40		60		1.0
1364			75	25	0.996473
1368			25	75	0.996473
1369	25		75		0.996473
1370		75		25	0.996473
1376	25		75		0.996473
1378	25	75			0.996473
1379		75		25	0.996473
1383		75		25	0.996473
1384		33		66	1.0
1385	33		66		1.0
1386		33	33	33	0.997753
1391		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain