SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene27957

Length: 1216 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene27957

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	metal ion binding	-	-	73%
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	76%
Blast2go	protein	-	-	85%

Source	GOs	Term	Type	Identity
Blast2go	metal ion binding	GO:0046872	Molecular Function	85%
Blast2go	mitochondrion	GO:0005739	Cellular Component	85%
Blast2go	plasma membrane	GO:0005886	Cellular Component	85%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: A9RXK0

Fln msg:

Fln protein: MPMPRPPLHSLQMLCRSSSLIACKTSRVKVHHMSDLVPGNRAFLVDTMAMVRKLEEEGMTPKQAEAITAVVTGVLKDSIHIISESFVSKEEMHKSEMLHEAALSKFKGEVKSSQDNHFSLLQRDTERLRTDIDKLRSELRYEIDKVTAGQRLDLNLERGRIREELSKQNTETSNLTNKLDREIHALKTQLEAGKYEVIKYCIGTVVSVTAVGLGLLRIFK*

Protein Length: 222

Fln nts: AATTGACCACAACTAAAACGCCCCCGCAAAAAAACAAATTGTTCGATACAGTAACAATCAGAGGGCTTTGTGCAGCAACCTGGTAGAATGTTTCATGGCAGAGGTCTGCGAAGATAAATTCAGGATCCGCAGTCAAGCAGTATGTAATATTGTGCTCTGCGCAGCCAGCGATTGCCATTTCACCGCAGTGCATTGCATCGCCATTAAAACTTCACACTAGCA_-_ATGCCAATGCCTCGCCCACCATTACATTCTTTGCAAATGCTCTGTCGATCATCGTCTTTAATTGCTTGCAAAACCTCCAGGGTTAAAGTCCACCACATGTCAGATCTCGTACCCGGGAACAGAGCTTTCTTAGTCGACACCATGGCCATGGTTCGAAAGTTGGAGGAAGAGGGCATGACGCCTAAGCAAGCAGAAGCAATCACGGCTGTCGTGACGGGGGTTCTCAAGGATAGCATACATATTATCTCTGAGTCTTTTGTTTCCAAAGAAGAAATGCATAAAAGTGAAATGCTCCATGAAGCTGCTTTATCAAAATTCAAGGGAGAAGTGAAGAGCTCTCAGGATAATCATTTTTCTCTGCTTCAGCGGGACACTGAAAGATTACGAACTGATATAGATAAACTTAGGAGTGAACTGAGGTATGAAATTGACAAGGTGACTGCTGGTCAACGACTAGACCTGAATCTGGAAAGGGGTCGCATACGAGAAGAACTATCCAAGCAGAACACAGAAACCTCAAATCTGACAAACAAACTTGATAGGGAGATTCATGCTTTGAAGACTCAACTTGAAGCTGGCAAATACGAGGTGATCAAATATTGTATAGGTACTGTTGTTTCTGTCACCGCTGTTGGCCTAGGATTGTTACGTATATTCAAGTGA___ATATTTAATTGCAGAGGTCTAAAAGGATGAACGGTTATTCAAGGAATAACCTAGAAACTAGGGTCATGTATGCTTGATGCAATTTTTTGAAATGCGGGGTGTTGAAAATTCAACTATGGAGCTTATTTATCTATTCATTCATTTACTTGTGCAAAGATTTGGAAAAAAGTGAGTGCGTCCTTATGAGATTGGAATTACTACAGATCGTTAGCAACTAAAATACTAATATATTGTTTAACAGGATGAAATGGACTAGTGTTTTTATGTTTGCCAACTCTATCTCTGCATTGTATACCAATGAAATAATAGCGCAAATACATGATTATTTCTC

Fln Alignment:

sp_v1.1_unigene27957___VHHMSDLV-PGN--RAFLVDTMAMVRKLEEEGMTPKQAEAITAVVTGVLKDSIHIISESFVSKEEMHKSEMLHEAALSKFKGEVKSSQDNHFSLLQRDTERLRTDIDKLRSELRYEIDKVTAGQRLDLNLERGRIREELSKQNTETSNLTNKLDREIHALKTQLEAGKYEVIKYCIGTVVSVTAVGLGLLRI
A9RXK0_______________MRNISQLVAPANNKRAFLVDTLALVRRLEAQGLTPKQAEAITAVITEVLNDSLENVAQSFTSKTEMTRSEMMAEAALSKFKGEVQSSQEHHFATLQRETERLRTDIDKMRSELRYEIDKVTAGQRLDLNLERGRIREELATQSSETSNLTNKLDREIHTLKTQLEAAKYDVIKYCIGTIVSVTAVGLGLLRI

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
629		10	89		0.999919
631	89			10	0.999919
636	89	10			0.999919
640	89	10			0.999919
641			89	10	0.999919
646	10		89		0.999919
849		83		16	1.0

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain