SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene27946

Length: 962 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene27946 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ATNAP9; ATNAP9; transporter	-	-	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	abc transporter family protein	-	-	86%

Source	InterPros	Term	Type	e value	Identity
Blast2go	ABC transporter-like	IPR003439	-	0.0	86%
Blast2go	AAA+ ATPase domain	IPR003593	-	0.0	86%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AC52

Fln msg: Distance to subject end: 60 aas, your sequence is shorter than subject: 291 - 329

Fln protein: MRCVLGSSLREPPAPPEEAAETMMVDGMKNVTVEINNLSFTYPGIDGHPPLGAKPLIQNFELTLRSGDRCLLVGANGAGKTTILKILGGKHMVEPQMVRVLGRPAFHDTSLISSGDLCYLGGEWRRDVAFAGFDVPLQMDVSAEKMIFGVHGIEPQRRDHLIKVLGIDLRWRMHNVSDGQRRRVQICMGLLRPFKVLLLDEITVDLDVLARADLLSFLKHECKDRGATIIYATHIFDGLDNWPSHIAYVARGKLQLALPLEEVEELKELSLMRTVEKWLRKEKEEEKRIRK

Protein Length: 292

Fln nts: AACATACGATTGATTACGCGCTCGCAAACTTCGTAATCTTGAAAATGGATTACTCACCTAATTCCCGATCGCAGCGACATGAAATAGC_-_ATGCGTTGTGTCCTTGGCTCGTCACTCAGAGAACCACCAGCTCCTCCAGAAGAAGCAGCAGAAACCATGATGGTGGATGGCATGAAAAATGTGACAGTGGAAATCAACAATCTCAGTTTCACATATCCTGGAATAGATGGCCATCCCCCGCTGGGAGCTAAGCCTCTTATTCAAAATTTCGAGCTTACTCTCCGGTCCGGGGATCGTTGCCTCCTGGTGGGCGCCAACGGAGCAGGGAAAACCACGATTCTGAAAATACTGGGAGGGAAACATATGGTCGAACCCCAGATGGTCCGCGTGCTCGGGAGACCGGCTTTTCATGATACTTCTTTGATTTCATCCGGTGATCTCTGTTACTTAGGAGGCGAGTGGCGAAGAGATGTTGCATTTGCTGGTTTTGATGTTCCGTTACAAATGGATGTTTCAGCCGAAAAAATGATATTTGGTGTTCATGGAATTGAACCTCAACGAAGAGATCACCTTATAAAGGTATTAGGCATTGACCTAAGATGGCGCATGCATAATGTATCAGATGGTCAAAGGAGACGTGTGCAGATTTGTATGGGCCTTCTACGGCCATTTAAGGTTCTTCTTCTAGATGAGATTACAGTTGACCTAGATGTACTTGCAAGGGCTGATTTATTGTCATTCTTAAAGCATGAATGTAAAGACAGAGGAGCCACAATTATCTATGCCACACATATATTTGATGGCCTTGATAATTGGCCATCACACATAGCATATGTTGCTCGTGGCAAACTACAGTTAGCTTTGCCATTAGAGGAGGTTGAGGAATTGAAAGAACTTTCCCTAATGAGGACAGTGGAGAAATGGTTGAGGAAAGAGAAGGAAGAAGAGAAGAGAATTCGAAAGG

Fln Alignment:

sp_v1.1_unigene27946___MMVDGMKNVTVEINNLSFTYPGIDGHPPLGAKPLIQNFELTLRSGDRCLLVGANGAGKTTILKILGGKHMVEPQMVRVLGRPAFHDTSLISSGDLCYLGGEWRRDVAFAGFDVPLQMDVSAEKMIFGVHGIEPQRRDHLIKVLGIDLRWRMHNVSDGQRRRVQICMGLLRPFKVLLLDEITXXXXXXXXXXXLSFLKHECKDRGATIIYATHIFDGLDNWPSHIAYVARGKXXXXXXXXXXXXXXXXXLMRTV
D5AC52_______________MMVDDMKSVTVEINNLNFTYPGIDGHPPPGAKPLIQNFSLTLRAGDRCLLVGANGAGKTTILKILGGKHMVEPHMVRVLGRSAFHDTSLTSSGDLCYLGGEWRRDVAFAGFDVPLQMDISAEKMIFGVHGIEPQRRDRLIKVLGVDLRWRMHNVSDGQRRRVQICMGLLQPFKVLLLDEITVDLDVLARADLLSFLKHECKDRGATIIYATHIFDGLDNWPSHIAYVARGKLQLALPLEEVEEMKELSLMRTV

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
853	66	5		27	1.0
855		5	27		1.0
858		64	29		1.0
860	64	35			1.0
867	75	6			1.0
869	25		75		1.0
870	75			25	1.0
872			75	25	1.0
896			25	75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain