SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene27945

Length: 1092 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene27945

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[RTKL] COG0515 Serine/threonine protein kinase	-	-	3.0e-19	34%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	42%
Blast2go	atp binding	-	-	0.0	69%

Source	InterPros	Term	Type	Identity
Blast2go	Protein kinase, catalytic domain	IPR000719	-	69%
Blast2go	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	69%
Blast2go	Serine/threonine-protein kinase, active site	IPR008271	-	69%
Blast2go	Protein kinase-like domain	IPR011009	-	69%
Blast2go	Protein kinase, ATP binding site	IPR017441	-	69%
Blast2go	Serine/threonine-protein kinase-like domain	IPR017442	-	69%
Blast2go	Tyrosine-protein kinase, catalytic domain	IPR020635	-	69%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PRI9

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 52 aas, your sequence is shorter than subject: 261 - 656

Fln protein: QELHISTNGFSEANLIGAGSFGSVYKGILSDGTLVAVKVLDLQNDQVEKSFKAECSVLQKVRHRNLVRIITSCSNLHFRALVFKLVSNGSLEKHLYPKRDDNNGEDVCELQWKTLLDIAIDVAHAMEYLHHDCFVQVVHCDIKPSNVLLDENMLGHVTDFGIARLIGESSTNSHASSLALRGSIGYIAPEYGLSGTVSTQGDVYSYGIMLLEMLTRKQPTNHMFVGDLNLHNWVNFAYPNNVNEVIESSIFSEMCGDEIK*

Protein Length: 262

Fln nts: ATCAAGAACTTCACATATCAACTAATGGATTTTCTGAGGCCAACTTGATTGGAGCCGGTAGTTTTGGTTCAGTGTACAAGGGAATTTTGAGTGATGGCACACTTGTTGCTGTCAAAGTTCTAGACTTGCAAAATGACCAGGTTGAGAAGAGCTTTAAAGCAGAATGTAGTGTCTTGCAGAAGGTCCGACATCGGAATTTGGTGAGGATCATAACCTCATGTTCCAACCTCCATTTCAGAGCTTTAGTGTTCAAGTTGGTGTCTAATGGAAGCTTAGAGAAGCATTTGTATCCTAAAAGAGATGACAACAATGGTGAGGATGTGTGTGAACTACAGTGGAAAACACTATTAGACATTGCCATAGATGTGGCCCATGCAATGGAATATCTTCATCATGATTGTTTTGTGCAAGTAGTACATTGTGATATAAAGCCTAGCAATGTACTTTTGGATGAAAATATGTTAGGCCATGTCACAGATTTTGGTATTGCAAGATTGATTGGTGAAAGCTCTACAAATTCACATGCTTCATCACTTGCTTTAAGAGGATCCATTGGCTACATTGCCCCAGAGTATGGATTGAGTGGAACAGTTTCCACCCAGGGAGATGTTTATAGCTATGGAATTATGTTATTGGAAATGCTCACCAGAAAACAACCAACCAATCACATGTTTGTGGGAGACCTAAACTTGCACAATTGGGTGAACTTTGCATACCCAAACAATGTGAATGAGGTAATTGAAAGTAGCATTTTTAGTGAGATGTGTGGAGATGAAATTAAATGAGAACAAAGTATATAAATGTCTACTAGATTTGCTACATGTTGGTTTGCTTTGTTCAAAACATTCACCAGAAGAAAGACCAACTATGAGAGTTGTGGTAAGGATGTTGGAGAGTATCAAAGAGGATTTGGAGGAAAATGCAGTTGCTTCTAGAAGATTGATACGAAGCATATCCAAGTTGCTTATCGATACAAATGCAATAAGGAATGATGCCTCTACATCAAATGACCAAAGTTCTTGTACATTTTAGTTTATGAAGTGAAGAATGACAAATATTTTAGGTATTGCCAACATTCATGTAATGTTAATA

Fln Alignment:

sp_v1.1_unigene27945___QELHISTNGFSEANLIGAGSFGSVYKGILSDGTLVAVKVLDLQNDQVEKSFKAECSVLQKVRHRNLVRIITSCSNLHFRALVFKLVSNGSLEKHLYPKRDDNNGEDVCELQWKTLLDIAIDVAHAMEYLHHDCFVQVVHCDIKPSNVLLDENMLGHVTDFGIARLIGESSTNSHASSLALRGSIGYIAPEYGLSGTVSTQGDVYSYGIMLLEMLTRKQPTN
C0PRI9_______________EDLEAATNGFSRTNLLGQGGFGYVYKGILPGSKTIAVKQLKVGGSQGEREFQAEVEIISRVHHRHLVSLVGYCIAGSQRLLVYEFVPNDTLEHHLHGKGQPN-------MEWPTRLKIAIGAARGLAYLHEDCYPKIIHRDIKASNILLDSNFEAKVADFGLAKLASEDFT--HVSTRVM-GTFGYLAPEYASSGKLTDRSDVFSFGVMLLELITGRRPVD

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
631			20	80	0.995493
632			20	80	0.995493
712			83	16	0.994512
738	83		16		0.994512
763	28		71		1.0
782	85	14			0.993533
783	28		14		1.0
786	85			14	0.993533
789	85	14			0.993533
791	85			14	0.993533
792	85			14	0.993533
793	85		14		0.993533
796	71	14	14		0.984337
799		14		85	0.993533
800	85			14	0.993533
801	85	14			0.993533
806		42		57	1.0
919	75	25			0.996473
947			25	75	0.996473

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain