SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene27940

Length: 1156 nt

Origin of reads: Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene27940

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Beta-glucosidase 13 n=2 Tax=Oryza sativa RepID=BGL13_ORYSJ	-	-	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	76%
Blast2go	bgl13_orysj ame: full=beta-glucosidase 13 short=os4bglu13 flags: precursor	-	-	69%

Source	InterPros	Term	Type	Identity
Blast2go	Glycoside hydrolase, family 1	IPR001360	-	69%
Blast2go	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	69%
Blast2go	Glycoside hydrolase, superfamily	IPR017853	-	69%
Blast2go	Glycoside hydrolase, family 1, active site	IPR018120	-	69%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NVG8

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 114 aas, your sequence is shorter than subject: 369 - 477

Fln protein: MLNMESHSEVNDNRRLRRSNFPPGFMFGVATSAYQCEGAAKEGGRGLSIWDSFCQTPGKIVDGSNGDVAVDQYHRYKEDVKLIKDMGVDVYRFSISWSRMFSKGKGEINEEGVAYYNNLINELLENGIQVSVTLFHWDAPQCLEDEYGGFLSPCMVTDYTAYAETCFRLFGDRVKQWITFNEPYLVCYFGYDRGLHAPGHSSFDNPIATEIYTVAHHILLAHAAAVEAYRTKYQVEQKGSIGITLVCNGTYPYSASLDDQNAAQRVIDFTLGWFMDPIISGKYPTTMKERIGNRLPKFTEQQSQQLKGTFDFIGVNYYTSQYAINCPEPTSQMSCWNRDCGARCVCERNGVLIGLKASDFLYVYATGK*

Protein Length: 370

Fln nts: GTTCAGGTTCAGGTCATAAGTACAGTGGATTGTAGTTCTGAATGCATCA_-_ATGTTGAACATGGAGAGTCACAGTGAAGTGAACGATAATAGGCGACTAAGGAGGAGCAATTTTCCTCCGGGATTCATGTTTGGGGTAGCAACTTCTGCTTATCAGTGTGAAGGAGCTGCAAAAGAAGGTGGAAGAGGTCTAAGCATCTGGGACTCATTTTGCCAGACACCAGGCAAAATTGTTGATGGGAGCAACGGTGATGTAGCTGTGGACCAGTACCATCGTTATAAGGAAGATGTTAAACTTATAAAAGATATGGGAGTGGATGTCTACAGATTCTCAATCTCATGGTCTCGAATGTTTTCAAAGGGAAAAGGGGAGATCAATGAGGAAGGAGTAGCCTATTACAATAACCTCATAAATGAACTCCTGGAGAATGGAATCCAAGTTTCTGTCACTTTGTTCCATTGGGATGCTCCCCAGTGTCTTGAGGATGAATATGGAGGATTTCTGAGTCCATGCATGGTGACTGATTATACTGCCTATGCAGAGACATGCTTCCGATTATTTGGTGATAGGGTTAAACAGTGGATCACTTTTAATGAACCTTATCTCGTTTGTTACTTTGGATATGATCGCGGACTTCATGCGCCTGGCCACAGTAGTTTTGATAATCCCATTGCAACTGAAATATACACAGTGGCACATCACATTCTTCTTGCACATGCAGCTGCTGTGGAAGCATATAGGACTAAATATCAGGTTGAGCAAAAGGGTTCTATTGGGATTACATTAGTGTGCAACGGGACCTATCCATATTCAGCATCTTTGGATGATCAAAACGCAGCTCAGAGGGTTATTGATTTCACGCTGGGATGGTTTATGGATCCAATAATTTCAGGCAAATACCCCACTACAATGAAAGAGAGAATTGGGAATCGTTTGCCAAAATTTACTGAGCAACAATCTCAACAGCTAAAAGGAACCTTTGACTTCATCGGAGTGAATTATTATACAAGTCAGTACGCGATAAATTGCCCGGAACCAACCAGTCAGATGTCCTGCTGGAATCGGGACTGTGGGGCACGTTGTGTTTGTGAGCGGAATGGGGTGTTGATAGGACTCAAGGCATCGGATTTTCTTTATGTGTATGCAACCGGGAAATAA

Fln Alignment:

sp_v1.1_unigene27940___EVNDNRRLRRSNFPPGFMFGVATSAYQCEGAAKEGGRGLSIWDSFCQTPGKIVDGSNGDVAVDQYHRYKEDVKLIKDMGVDVYRFSISWSRMFSKGKGEINEEGVAYYXXXXXXXXXXGIQVSVTLFHWDAPQCLEDEYGGFLSPCMVTDYTAYAETCFRLFGDRVKQWITFNEPYLVCYFGYDRGLHAPGHSSFDNPIATEIYTVXXXXXXXXXXXVEAYRTKYQVEQKGSIGITLVCNGTYPYSASLDDQNAAQRVIDFTLGWFMDPIISGKYPTTMKERIGNRLPKFTEQQSQQLKGTFDFIGVNYYTSQYAINCPEPTSQMSCWNRDCGARCVCERNGVLIGLKASDFLYVYATG
A9NVG8_______________EVNGDKAVRRSDFPPGFMFGIATSAYQCEGAAKEGGKGPSIWDSFSRTPGKILDGSNGDVAVDQYHRYKEDVKLMKDMGVDTYRFSISWPRIFPKGKGEINEEGVTYYNNLINELLQNGIQASVTLFHWDTPQSLEDEYGGFLSPYIVTDFTAYAEACFRLFGDRVKQWITFNEPFMYCNLGYDLGVLAPGLYGFQSPAADEMYTAGHYMLLAHAAAVEAYRSKYKLEQKGSIGLTLVCNWIYPYSTSQEDQDAAQRAVDFMLGWFIDPVTSGDYPFTMRDRLGDRLLKFTEQQSQQLKGSFDFLGMNYYTSQYAINCLDPTNVNSVWNRDCGANLVSERSGVPIGLKASFWLYVYAPG

SNPs (tot: 5)

Position	A %	G %	T %	Probability
438		20	80	0.997017
464		75	25	0.997389
594	75		25	0.996473
846	16	83		0.994512
897	66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain