SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene27936

Length: 1152 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene27936

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	RNA helicase n=1 Tax=Vigna radiata var. radiata RepID=Q9M6R6_PHAAU	-	-	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	44%
Blast2go	rna helicase	-	-	82%

Source	GOs	Term	Type	e value	Identity
Blast2go	binding	GO:0005488	Molecular Function	0.0	82%
Blast2go	nucleolus	GO:0005730	Cellular Component	0.0	82%

Source	InterPros	Term	Type	Identity
Blast2go	RNA helicase, ATP-dependent, DEAD-box, conserved site	IPR000629	-	82%
Blast2go	Helicase, C-terminal	IPR001650	-	82%
Blast2go	DNA/RNA helicase, DEAD/DEAH box type, N-terminal	IPR011545	-	82%
Blast2go	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	82%
Blast2go	RNA helicase, DEAD-box type, Q motif	IPR014014	-	82%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKW8

Fln msg: Distance to subject end: 353 aas, your sequence is shorter than subject: 384 - 802

Fln protein: VGSSGEKKHKKKKDRQGEEEEVDHAMNGSESMTSKRKLSKEAVGDDSSPKRSKKKKKTWGSDVEEEEEEEKEEKEENPNAVSNFNISEPLRQKLKSKGIESLFPIQAMTFEIIFNGSDMVGRARTGQGKTLAFVLPIVESLTNGPNAKGRNTAYGRAPSVIVLVPTRELAKQVHADFEVYGGAVGLHSSSVYGGAPYGPQEYALRRGVDIIVGTPGRIKDHIERGTLNLKSLKFRVLDEADEMLNMGFVEHVETILGKVEDVSKVQTLLFSATMPDWVKKIASRFLKPDRKTADLVGDDKMKASRSVRHIVLPCFYSARTQVIPDVIRCYSSGGSVIVFTETKNDASELAGSLQNARALHGDIQQSQREVILAGFRSGKFPLLV

Protein Length: 385

Fln nts: GTCGGCTCGTCTGGCGAGAAGAAGCACAAGAAGAAGAAGGATAGGCAGGGCGAGGAAGAGGAGGTGGACCATGCCATGAACGGAAGTGAATCTATGACCTCCAAGAGGAAATTGTCCAAGGAGGCCGTAGGTGATGATTCCAGTCCCAAGCGCAGCAAGAAGAAGAAGAAGACATGGGGCAGCGATGTCGAAGAGGAAGAAGAAGAAGAGAAGGAAGAGAAGGAAGAGAATCCCAACGCGGTTTCTAATTTCAATATTTCGGAGCCACTGAGGCAGAAGCTCAAGTCCAAGGGGATTGAGTCACTCTTCCCCATCCAGGCAATGACCTTCGAAATTATCTTCAATGGCTCGGACATGGTCGGTCGAGCTCGTACAGGACAGGGTAAAACATTGGCATTTGTGTTGCCTATCGTGGAGTCATTAACAAATGGTCCGAATGCCAAAGGTAGGAATACAGCCTATGGAAGGGCCCCCAGTGTGATTGTGTTAGTTCCAACAAGGGAGCTTGCAAAACAGGTCCATGCTGACTTTGAGGTTTATGGTGGAGCTGTTGGCCTTCATTCATCCTCTGTATATGGAGGTGCTCCCTATGGTCCACAGGAATATGCATTGCGTAGAGGTGTGGATATCATTGTCGGGACACCTGGGCGCATTAAGGATCATATTGAAAGAGGGACATTGAATCTGAAATCCTTGAAATTTCGTGTCTTGGATGAGGCTGATGAAATGCTGAACATGGGCTTTGTAGAGCATGTTGAGACCATTCTTGGAAAAGTTGAGGATGTAAGCAAGGTTCAGACACTTCTTTTTAGTGCAACAATGCCAGATTGGGTAAAGAAGATTGCATCAAGGTTCTTGAAACCTGACAGAAAAACTGCAGATCTTGTGGGAGATGATAAGATGAAAGCTAGTAGAAGTGTGAGACACATCGTTCTTCCTTGTTTTTATTCAGCAAGAACACAAGTTATACCAGATGTTATTCGCTGCTATAGCAGTGGGGGAAGTGTGATTGTTTTTACTGAGACAAAGAATGATGCATCTGAACTCGCTGGATCTTTGCAAAATGCTCGTGCTTTGCATGGGGATATACAACAATCACAACGTGAAGTGATTCTTGCTGGATTCCGTTCGGGAAAGTTTCCACTCCTAGTT

Fln Alignment:

sp_v1.1_unigene27936___VSNFNISEPLRQKLKSKGIESLFPIQAMTFEIIFNGSDMVGRARTGQGKTLAFVLPIVESLTNGPNAKGRNTAYGRAPSVIVLVPTRELAKQVHADFEVYGGAVGLHSSSVYGGAPYGPQEYALRRGVDIIVGTPGRIKDHIERGTLNLKSLKFRVLDEADEMLNMGFVEHVETILGKVEDVSKVQTLLFSATMPDWVKKIASRFLKPDRKTADLVGDDKMKASRSVRHIVLPCFYSARTQ--VIPDVIRCYSSGGSVIVFTETKNDASELAGSLQN---ARALHGDIQQSQREVILAGFRSGKFPLLV
B8LKW8_______________LSGLNLSQELVEALANRGITHLFPIQRAVLVPALEGRDLIGRAKTGTGKTLAFGIPIIERLTKDNKENKLLRQSRRLPRVLVLAPTRELAKQVEKEFKE--SAPFLSTACIYGGVSYVSQQNALARGVDVVVGTPGRIIDLVNSKSLKLNEVQFLVLDEADQMLAVGFEEDVEIILDNLP--AERQSMLFSATMPGWVKKLSRKHLN-NPMTIDLVGENEEKLAEGIKLYAVATTTSSNSKRSILGDLITVFAKGGKTIVFTQTKRDADEISLGLSSTIACEALHGDISQHQRERTLAGFREGKFSALV

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
681		88		11	0.923564
851		10		90	0.90298
865	90		10		0.90298

SSRs (tot: 3)

Start position	End position	Sequence	Length
28	39	AAG AAG AAG AAG	12
157	172	AAG AAG AAG AAG AAG A	16
196	209	GAA GAA GAA GAA GA	14

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain