SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene27930

Length: 871 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene27930

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Translation initiation factor n=4 Tax=eudicotyledons RepID=B5M1Y2_RHEAU	-	-	94%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	100%
Blast2go	protein	-	-	96%

Source	InterPros	Term	Type	Identity
Blast2go	Translation initiation factor 1A (eIF-1A)	IPR001253	-	96%
Blast2go	RNA-binding domain, S1, IF1 type	IPR006196	-	96%
Blast2go	Nucleic acid-binding, OB-fold	IPR012340	-	96%
Blast2go	Nucleic acid-binding, OB-fold-like	IPR016027	-	96%
Blast2go	Translation initiation factor 1A (eIF-1A), conserved site	IPR018104	-	96%

Full-Lengther Next Prediction

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
205		33	33	33	0.997753
212	66			33	0.997452
214	66		33		0.997452
215			33	66	0.997452
217		66		33	0.997452
221		33	66		0.997452
222			66	33	0.997452
254		20	80		0.995493
260	80	20			0.995493
265		80	20		0.995493
273		20	80		0.995493
274	20	80			0.995493
296	88		11		0.923564
297	88		11		0.923564
719	94		5		0.998744

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain