SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene27906

Length: 1437 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene27906

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Beta-expansin 3, putative n=2 Tax=Malpighiales RepID=B9RW20_RICCO	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	82%
Blast2go	beta-expansin 3	-	-	80%

Source	GOs	Term	Type	e value	Identity
Blast2go	syncytium formation	GO:0006949	Biological Process	0.0	80%

Source	InterPros	Term	Type	Identity
Blast2go	Major pollen allergen Lol pI	IPR005795	-	80%
Blast2go	Expansin/pollen allergen, DPBB domain	IPR007112	-	80%
Blast2go	Pollen allergen/expansin, C-terminal	IPR007117	-	80%
Blast2go	Expansin/Lol pI	IPR007118	-	80%
Blast2go	Barwin-related endoglucanase	IPR009009	-	80%
Blast2go	Barwin-like endoglucanase	IPR014733	-	80%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A9L6

Fln msg:

Fln protein: MRRTVGLQWPLVPNVCVNVTAFCFVLLLLFSCKEAALGLEHTELNRDDLEWRPATATWYGSPDGDGSDGGACGYGGLVDQKPLRARVGAVSPVLFKGGEGCGACYKVKCMEKGLCSEKPVTVVITDECPGGYCAFGRTHFDLSGAAFGRMATNGKTPALLNTGELPVLYRRTLCEYPGKNITFHVTEGSTAYWFSILIEYEDGDGDVGAMHLKQADSDAWMEMNHVWGANWCLLGGTPLKAPFSVRVTTLTNKRTLSARNVIPDHWYPNATYKARLNFED*

Protein Length: 282

Fln nts: TTATGGCTTCTATTGATTTGGGCCCCTTTGCGCCCCAGATTTCAAGCAAAGTGAAAAGGAGTTGACAGTTATTCTGTAGGGATGGGATATGATAGTATAAATTCCCTCCTAAAGCTCTCGTCTCTGCACCAATAAATCTGGGTTTGTTGTTCCTTTGCGTTTCATTGCTTTCTTGGTTAGTTTATTTCGTTAGT_-_ATGAGGCGGACAGTTGGGCTTCAATGGCCGCTGGTGCCCAATGTCTGTGTAAATGTAACTGCATTTTGCTTTGTATTGTTGTTGTTGTTTTCGTGCAAGGAAGCAGCGTTGGGTTTGGAACACACTGAGCTTAATAGAGATGACTTGGAATGGCGCCCTGCTACAGCCACCTGGTATGGCAGTCCAGATGGCGATGGCAGCGATGGTGGGGCCTGCGGGTATGGCGGCCTTGTAGACCAGAAGCCTCTGCGAGCGAGAGTAGGCGCTGTAAGCCCCGTTTTATTCAAAGGCGGAGAGGGCTGTGGAGCGTGCTACAAGGTTAAGTGCATGGAGAAAGGCTTATGCTCCGAGAAACCTGTAACTGTGGTGATTACTGATGAATGCCCAGGAGGATACTGTGCGTTCGGTAGAACACATTTTGATCTGAGTGGAGCTGCGTTTGGTCGTATGGCCACCAATGGCAAAACCCCAGCGCTTCTCAACACTGGAGAGCTCCCCGTTCTTTACAGACGGACATTGTGCGAATATCCGGGGAAGAATATAACTTTCCATGTGACCGAAGGCTCAACTGCCTATTGGTTCTCCATACTCATCGAATACGAAGACGGAGATGGCGATGTGGGAGCCATGCATCTAAAACAGGCGGATTCAGATGCGTGGATGGAAATGAATCATGTTTGGGGAGCCAACTGGTGTCTATTGGGAGGCACTCCACTGAAGGCGCCATTCTCTGTGCGAGTGACAACGCTGACGAACAAACGAACGTTGTCTGCGAGGAACGTGATTCCCGATCACTGGTATCCTAATGCCACCTACAAAGCGCGCCTCAATTTCGAGGACTAG___CCCCCCCAGGATTTGACCTCCCTTGTTTCATAATTTTTTTATTCTTTTAATGTGTAAAATTCAAGGTCTGTAAGTATCAACCGCCCAGAGCTTCCAGACGTCTCTGAAATGTGCAGGTGGTGTCGGGATGGTAGCTCTAGAAACTGGCATCCTGTCAGGAGAACATATGTCGTTTAGTGTATGTATATTTATTATTTCTTGTACGCGTGGCGGAGTGAAACCTGACATAAGCAATGATAATCTTTGTGGACAAATGTGTATAGACGAGTCCAAAATAATAGGTATTTTAGTGTGACCCTATTGTATTCATCAATTTATTTCCCCAGGGGTAAGATTTATGAATTCATTATATGTAAATTTATTATTGTATAATGGTGAGCCTACTCGTATAGAGTTTGTA

Fln Alignment:

sp_v1.1_unigene27906___MRRTVGLQWPL-VPNVCVNVTAFCFVLLLLFSCKEAALGLEHTELNRDDLEWRPATATWXXXXXXXXXXXXXXXXXXLVDQKPLRARVGAVSPVLFKGGEGCGACYKVKCMEKGLCSEKPVTVVITDECPGGYCAFGR-THFDLSGAAFGRMATNGKTPALLNTGELPVLYRRTLCEYPGKNITFHVTEGSTAYWFSILIEYEDGDGDVGAMHLKQADSDAWMEMNHVWGANWCLLGGTPLKAPFSVRVTTLTNKRTLSARNVIPDHWYPNATYKARLNFE
D5A9L6_______________MMRTVSLQWPLLVSNVCVDVLATCFVLLLLFSCKEAAVALDHTELRGNAMEWRSAIATWYGSPDGDGSDGGACGYGTLVDQKPLRATVGAVSPVLFHGGEGCGACYKVKCMEKGLCSQKPVTVVITDVCGGGYSAFGGGTHFDLSGAAFGRMATHGKTPALLNSGELPVLYRRTFCKYPGKNISFHVTEGSTVYWFSILIEYEDGDGDVGAVHLKQVDSNAWMKMRHIWGVNWFLPGGAPLKAPFSVRVTTLTSKRTLSAMNVIPEHWYPNATYSARVKFD

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
877	14		85		0.993533
949	81		18		0.999994
1105		80	20		0.995493
1128	12	87			0.992554
1129			12	87	0.992554
1132		87	12		0.992554
1133	87			12	0.992554
1137		12	87		0.992554
1139		87		12	0.992554
1140			12	87	0.992554
1144	87			12	0.992554
1145	87	12			0.992554
1148		12	87		0.992554
1329	14		85		0.993533

SSRs (tot: 1)

Start position	End position	Sequence	Length
270	283	TTG TTG TTG TTG TT	14

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain