SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene27882

Length: 1804 nt

Origin of reads: Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene27882

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Glutamate decarboxylase n=2 Tax=Pinaceae RepID=A0EJ89_PINPS	-	-	91%
FL-Next	tr=Glutamate decarboxylase; Pinus pinaster (Maritime pine).	-	-	93%
Blast2go	glutamate decarboxylase	-	-	87%

Source	InterPros	Term	Type	Identity
Blast2go	Pyridoxal phosphate-dependent decarboxylase	IPR002129	-	87%
Blast2go	Glutamate decarboxylase	IPR010107	-	87%
Blast2go	Pyridoxal phosphate-dependent transferase, major region, subdomain 1	IPR015421	-	87%
Blast2go	Pyridoxal phosphate-dependent transferase, major domain	IPR015424	-	87%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A0EJ89

Fln msg:

Fln protein: MALSSATDSDGSIHSTFASRYVQESLPRFQIPSRSIPKDAAYQIISDELMLDGNPRLNLASFVTTWMEPECDKLIMQAINKNYVDMDEYPVTTELQNRCVNIIANLFNAPLGDGEEAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLKKDYYIMDPVKAVEMVDENTICVAAILGSTYNGEFEDVKLVNDLLIQKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRAKQDLPEELIFHINYLGADQPTFTLNFSKGASQIIAQYYQLIRLGFEGYRNIMCNCAANAKTLADGLMRTGRFNILSKEVGVPLVAFSLKDSSRHDEFEISDHLRRFGWIVPAYTMAPDAQHVTLLRVVVREDFNRSLAERLVRDIEKVLQELDALPPKLVREVTASLAERHPELKEDKDSGAWKLNSSNVFHEIVNSQKAVKAWKKFVAQKPNRIC*

Protein Length: 509

Fln nts: TGGGGTTTATTTTGAAAATCAACCGAAA_-_ATGGCTCTGAGCAGCGCTACTGATTCTGATGGCTCCATACATTCAACCTTTGCCTCCAGATATGTTCAGGAATCCTTGCCTCGGTTTCAAATTCCGAGTAGGTCGATTCCCAAAGATGCTGCCTATCAGATCATCAGCGACGAGCTCATGTTGGATGGGAACCCCAGACTTAATCTTGCTTCTTTTGTCACCACATGGATGGAACCAGAATGTGATAAGCTCATCATGCAGGCAATCAACAAGAATTATGTCGACATGGATGAGTATCCTGTCACTACAGAATTGCAGAATCGATGCGTGAACATTATAGCCAATCTGTTTAACGCCCCACTTGGCGATGGAGAGGAAGCTGTTGGTGTGGGCACGGTTGGATCTTCAGAGGCGATCATGTTGGCAGGCCTTGCATTCAAACGCAAATGGCAGAACAAACGCAAGGCAGAGGGGAAGCCGTATGACAAGCCAAACATTGTGACAGGTGCAAATGTCCAGGTGTGCTGGGAGAAATTTGCTCGTTATTTTGAAGTAGAGCTGAAGGAAGTTAAACTGAAGAAGGATTACTATATCATGGATCCTGTTAAGGCTGTTGAGATGGTGGATGAGAACACTATTTGTGTGGCAGCCATCTTGGGTTCCACTTACAATGGAGAGTTCGAAGATGTCAAGCTGGTGAACGATCTCCTCATCCAGAAAAACAAGGAAACAGGGTGGGACACGCCCATCCATGTGGACGCCGCTAGCGGCGGATTTATTGCACCGTTCCTGTACCCTGAGTTGGAATGGGATTTCCGGCTTCCATTGGTGAAGAGCATCAACGTCAGCGGGCACAAGTATGGTCTCGTCTATGCCGGAATCGGATGGGTTATCTGGAGAGCAAAGCAAGATCTCCCTGAGGAGCTCATCTTTCACATCAATTATTTGGGCGCCGATCAGCCCACCTTCACCCTCAACTTCTCCAAAGGTGCCAGCCAAATAATTGCTCAATATTACCAGCTCATACGTCTGGGGTTTGAGGGCTATCGAAATATCATGTGTAACTGCGCAGCCAACGCCAAGACTCTGGCCGATGGTCTGATGAGGACCGGGCGGTTCAACATACTGTCGAAAGAGGTGGGGGTTCCTCTGGTGGCGTTCTCGCTCAAGGACAGTAGCAGGCACGATGAGTTTGAGATTTCTGACCACCTGAGAAGGTTCGGGTGGATCGTGCCCGCCTACACCATGGCTCCCGACGCGCAGCACGTCACCCTTCTGCGCGTGGTGGTTCGCGAAGATTTCAACCGGAGTCTGGCGGAACGACTGGTTCGTGACATAGAGAAGGTGTTGCAGGAGCTTGACGCGCTTCCTCCAAAGTTAGTGAGGGAAGTGACCGCTTCTCTGGCGGAAAGGCACCCTGAACTCAAAGAAGACAAAGACTCTGGCGCCTGGAAGTTGAATTCGTCAAATGTGTTTCATGAGATCGTTAACTCTCAAAAAGCCGTAAAAGCATGGAAGAAATTTGTTGCACAGAAGCCTAATCGTATATGCTGA___ATATCCTACTCCAGTTATTATCTTTTATTTTAGTTCCTGGGCGCCAGTGTGGGGTTTTTCGAAATGTAACTTTGTAAACTTTGGGGAGTACACAATCCTTCTCCAATTAACATGGTGTCGTGGATTCTGTAGGTAATTTTAATCCTTTCCAGAATTTCAGAGTCCACCTTGAATAATTTCCGGAATATTTATCTGTATAAGTTTATGAATGGAAGAACACACTAGCCTTTCACTTTGGCATGTTTTACTTTT

Fln Alignment:

sp_v1.1_unigene27882___MALSSATDSDGSIHSTFASRYVQESLPRFQIPSRSIPKDAAYQIISDELMLDGNPRLNLASFVTTWMEPECDKLIMQAINKNYVDMDEYPVTTELQNRCVNIIANLFNAPLGDGEEAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPYDKPNIVTGANVQVCWEKFARYFXXXXXXXXXXXDYYIMDPVKAVEMVDENTICVAAILGSTYNGEFEDVKLVNDLLIQKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRAKQDLPEELIFHINYLGADQPTFTLNFSKGASQIIAQYYQLIRLGFEGYRNIMCNCAANAKTLADGLMRTGRFNILSKEVGVPLVAFSLKDSSRHDEFEISDHLRRFGWIVPAYTMAPDAQHVTLLRVVVREDFNRSLAERLVRDIEKVLQELDALPPKLVREVTASLAERHPELKEDKDSG--AWKLNSSNVFHEIVNSQKAVKAWKKFVAQKPNRIC
A0EJ89_______________MALSSATDSDGSIHSTFASRYVQESLPRFQIPSRSIPKDAAYQIISDELMLDGNPRLNLASFVTTWMEPECDKLIMQAINKNYVDMDEYPVTTELQNRCVNIIANLFNAPLGDGEEAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLKKDYYIMDPVKAVEMVDENTICVAAILGSTYNGEFEDVKLVNDLLIQKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRAKQDLPEELIFHINYLGADQPTFTLNFSKGASQIIAQYYQLIRLGFEGYRNIMGNCAANAKALSDGLVRTGRFNILSKEIGVPLVAFSLKDSSRHDEYEISDHLRRFGWIVPAYTMAPDAQEVKLLRVVVREDFNRSLAERLVHDIEKVLHELDTLPSKIAREVVASLVDGHPELKEVKDLGIDVTQFKSSAVFNEIVNSQKAVKAWKKFVAQKANRVC

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
907	66	33			0.997452
910		33		66	0.997452
919	33		66		1.0
925		33		66	1.0
940		33		66	0.997452
955		33		66	0.997452
1069	25		75		0.996473

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain