SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene27863

Length: 1048 nt

Origin of reads: Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene27863

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	EYE; EYE (EMBRYO YELLOW)	-	-	63%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	65%
Blast2go	protein	-	-	72%

Source	GOs	Term	Type	Identity
Blast2go	protein retention in Golgi apparatus	GO:0045053	Biological Process	72%
Blast2go	Golgi organization	GO:0007030	Biological Process	72%
Blast2go	shoot morphogenesis	GO:0010016	Biological Process	72%
Blast2go	cell growth	GO:0016049	Biological Process	72%
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	72%
Blast2go	meristem structural organization	GO:0009933	Biological Process	72%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Conserved oligomeric Golgi complex, subunit 7	IPR019335	-	0.0	72%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: B9GVE7

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 233 - 788

Fln protein: LPYQV*VNLLWIVLRLMDAPEKARRLSNLLEQARDPRFHALPHTSQRVGAFSNAVNELVYEVLILKVRQRIKDVSRMAIWTSAKEKALSSSADVQIGEYLLTLPQQLEPLVLDAGTTGLNTNAEANTDEAQFFATEWMFKVAEGATALYIEQLRGIQSLSDHGAQQLSVDIEYLCNVLSALSMPIPQVLATFQNCLATSREELRELVKSDAVGQLDLPTARLICKIRHVTLD*

Protein Length: 234

Fln nts: AGCTGCCATATCAAGTCTAGGTGAACCTGCTTTGGATAGTTCTTCGGTTAATGGATGCACCTGAAAAGGCTAGGAGGCTTTCCAATCTACTGGAGCAGGCAAGGGATCCTCGATTTCATGCTCTTCCACATACTTCTCAAAGGGTTGGAGCTTTCTCAAATGCTGTCAATGAACTTGTTTATGAGGTTCTGATATTAAAAGTTCGGCAAAGGATCAAAGATGTATCTAGAATGGCAATCTGGACGTCAGCTAAAGAAAAAGCATTGTCTTCTTCAGCTGACGTCCAGATTGGTGAATATCTTCTTACTTTACCTCAACAACTAGAGCCTCTTGTATTGGATGCTGGGACAACAGGATTGAATACCAATGCGGAGGCAAACACTGATGAAGCTCAATTTTTTGCAACTGAGTGGATGTTCAAGGTTGCAGAAGGTGCCACAGCCCTTTACATTGAACAATTGCGAGGTATTCAGTCATTAAGTGATCACGGAGCTCAACAACTATCAGTAGATATTGAATATCTCTGTAATGTACTATCTGCTCTTTCAATGCCAATTCCTCAAGTTTTGGCTACTTTTCAGAACTGTCTCGCTACTTCTAGAGAGGAGCTTCGAGAACTTGTGAAATCAGATGCAGTAGGTCAACTTGACTTACCAACTGCCCGACTTATCTGTAAAATTCGTCATGTAACATTGGATTAA___TGTAATCAGTCTTATTGGCCAAGAGCATATCTTGCAGTTTGTGTTACCGAATTCATCACACTAGGTGAGAATGCTCAACGATCAGTTATAGAACGTATGGAGATGAAGTTTCTGGACTGCAAGGAAAGTAGATTTGATGTAGCATATGAAGCTTTGAGTGGAAGGGCACCTTGGTAGAGGCAATATATGCTCTATCAATTAACTAGGGTTCTGCAGTACTCTCCAAGTTTCATTGCTCCTTTATGGCATTGGAGGTAATGACACTAGGAATTTTCACATTTGTCCTGTAAAACATTGGATCCATTTTTGATTACCAGATTGAAGGTTATTTTCTATTTATATTCAGT

Fln Alignment:

sp_v1.1_unigene27863___VLRLMDAPEKARRLSNLLEQARDPRFHALPHTSQRVGAFSNAVNELVYEVLILKVRQRIKDVSRMAIWTSAKE---------KALSSSADVQIGEYLLTLPQQLEPLVLDAGTTGLNTNAEANTDEAQFFATEWMFKVAEGATALYIEQLRGIQSLSDHGAQQLSVDIEYLCNVLSALSMPIPQVLATFQNCLATSREELRELVKSDAVGQLDLPTARLICKIRHVTLD
B9GVE7_______________VVRLVDAPEKARKLFNLLDQSKDPRFHALPLASQRVSAFADAVNELVYDVLISKVRQRLSDVSRLPIWSAVDEHSSFRLPTFSAYPQSYVTSVGEYLLTLPQQLEPLA-----DGISNN-DANNEEAQFFATEWMFKVAEGATALYMEQLRGIQYITDRGAQQLSVDIEYLSNVLSALSMPIPPILATFHTCLSTPRDQLKQLVKSDSGNQLDLSTANLVCKIRRVSLD

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
549			25	75	0.996473
550	25			75	0.996473
552	66	33			0.997452
553	66			33	0.997452
556		66	33		0.997452
558	66			33	0.997452
559	66		33		0.997452
561		33		66	0.997452
562	33	66			0.997452
567	66	33			0.997452
568	33		33		0.997753
595		75		25	0.996473
626			75	25	0.996473
627	25			75	0.996473
628		25	75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain