SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene27861

Length: 1687 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene27861

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	SLY1A; SM/Sec1-family protein	-	-	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	sm sec1-family protein	-	-	82%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Sec1-like protein	IPR001619	-	0.0	82%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NYG5

Fln msg: your sequence is shorter than subject: 433 - 627

Fln protein: IIRCAKGGPAEMVASALDSRLRDHLLSKNNLFTEAGSLGSSFQRPLLCIFDRNFELSAAIQHEWSYRPLVHDVLGMKLNRVTVHGDAAAAGGGGKGKGAVKSYELDDSDNFWVANSSAPFPKVAEEVESRLSKYKQDVEEVNRRTGGQRDIDFDGQELIGNTKHLMNAVNSLPELTERKKIIDKHTNILTALLSEIKERSLDSYCTTEDDMLAKGSIDKNAVLTILRGKGTKMDKLRLAIIYLLASETTPPAEVEAIESVLKEVEVDLSAFQYVKRIKSLNMSLTSSSAGSRSNIVDWAEKLYGQSLSAVTAGMKSLLSGGRQLTMTRTVEALMEARPSPDIETYLLFDPRAPKSSSVVGTHSKGPFKEAIVFMIGGGNYIEYGSLQELAQRQQPVKNIIYGTTEVLTGVELVEQLTVLGQKMGLGGLGPSH*

Protein Length: 434

Fln nts: TATAATTCGCTGTGCCAAGGGTGGACCTGCAGAAATGGTTGCTTCTGCGCTTGACTCTCGCCTGCGCGATCACCTTTTGTCGAAGAACAATCTATTTACTGAGGCTGGGAGCCTTGGCAGTTCGTTCCAGAGGCCCCTTTTGTGTATATTTGATAGGAATTTCGAACTTTCTGCTGCGATACAGCATGAATGGAGTTATCGACCACTGGTTCATGATGTGTTAGGCATGAAACTCAATAGAGTTACTGTCCATGGAGATGCAGCAGCAGCTGGAGGTGGTGGAAAAGGAAAGGGGGCAGTAAAATCTTATGAGTTAGACGATTCAGACAACTTCTGGGTAGCAAACAGCTCTGCTCCATTTCCAAAAGTTGCAGAAGAAGTTGAATCACGGCTCAGTAAATACAAGCAGGACGTAGAGGAGGTTAATAGGAGAACAGGCGGCCAGAGAGATATCGATTTTGATGGCCAGGAACTGATAGGAAACACAAAGCACTTGATGAATGCAGTGAATTCTCTTCCAGAGCTGACGGAGAGGAAAAAGATTATTGATAAACATACCAATATCTTAACTGCTTTGCTCAGTGAGATTAAAGAAAGATCACTGGATTCCTACTGCACCACGGAGGATGACATGTTGGCAAAGGGTAGCATTGATAAAAATGCAGTGCTGACAATTTTGAGAGGGAAGGGTACCAAGATGGATAAGCTGCGACTTGCCATCATATATCTGCTTGCTTCCGAAACTACACCGCCAGCAGAAGTTGAAGCCATAGAATCGGTGCTAAAGGAGGTTGAGGTGGATCTTTCAGCTTTTCAATATGTAAAGAGGATTAAATCTTTAAATATGTCACTAACATCATCTAGTGCTGGAAGCAGAAGTAACATTGTTGATTGGGCAGAGAAATTATATGGGCAATCCCTTAGTGCAGTAACTGCAGGCATGAAGAGCCTTCTTTCTGGTGGTAGGCAGCTCACAATGACAAGGACAGTAGAAGCATTGATGGAAGCAAGGCCTAGTCCAGATATTGAGACGTATCTTCTCTTTGATCCACGGGCTCCTAAATCCAGTTCTGTGGTTGGCACTCACTCAAAGGGCCCTTTCAAGGAGGCAATAGTGTTCATGATCGGGGGAGGAAATTATATAGAGTATGGAAGTCTGCAGGAATTGGCACAAAGACAACAACCTGTAAAGAATATTATTTATGGAACAACAGAGGTTCTAACTGGGGTAGAGTTGGTTGAACAATTGACGGTACTGGGGCAGAAAATGGGGCTTGGTGGACTTGGACCATCACATTAA___TATAAATGTCTATAGAGGGGTATTCTTTCTTCTCTTGCCAGTCAAGACTCTTGTGTTTGGAATGATATTTTTATATTACCAGAAGTATTTTTTCGTTCATATCGGCTTCCAAAATTACTAATGCAAGATTAGTGTCTTTTTGGAGTTCAAAATGTTTCTCCTATTTGCATTATTATCTTGTCTTTTGTTTTTGCTTTCCTAGATTATTTGTAGCAAGACGTTGACTTCTTGGCGCTTTTGTACGGCCTTCTACATTCAACTAGACATTTGAAAACTATCATTCAATGTTCTTACTTCTCCTTAGGCTACCAACCACAGTTGGAATTGTGCTTTTCAATCTAGTTCAGAATTTTCTGAATGGAAACATTCAGCTTCTTTAGTTCCTAG

Fln Alignment:

sp_v1.1_unigene27861___IIRCAKGGPAEMVASALDSRLRDHLLSKNNLFTEAGSLGSSFQRPLLCIFDRNFELSAAIQHEWSYRPLVHDVLGMKLNRVTVHGDXXXXXXXXXXXXXVKSYELDDSDNFWVANSSAPFPKVAEEVESRLSKYKQDVEEVNRRTGGQRDIDFDGQELIGNTKHLMNAVNSLPELTERKKIIDKHTNILTALLSEIKERSLDSYCTTEDDMLAKGSIDKNAVLTILRGKGTKMDKLRLAIIYLLASETTPPAEVEAIESVLKEVEVDLSAFQYVKRIKSLNMSLTSSSAGSRSNIVDWAEKLYGQSLSAVTAGMKSLLSGGRQLTMTRTVEALMEARPSPDIETYLLFDPRAPKSSSVVGTHSKGPFKEAIVFMIGGGNYIEYGSLQELAQRQQPVKNIIYGTTEVLTGVELVEQLTVLGQKMGLGGLGPSH
A9NYG5_______________IIRCARGGPAEMVASALDSRLRDHLLSKNNLFTEAGSLGSSFQRPLLCIFDRNFELSAAVQHEWSYRPLVHDVLGMKLNRVTVHGDATAAGGGGKGKGAVKSYELDDSDNFWVANSSAPFPKVAEEVELQLSKYKQDVEEVNRRTGGQRDIDLDGQELIGNTKHLMNAVNSLPELTERKKIIDKHTNIATALLSEIKERSLDSYCTTEDDMLAKGSIDKNAVLTILRGKGTKMDKLRLAIIYLLASETTPQAEVEAIESVLKEVGVDLSAFQYVKRIKSLNISLTSSSAGSRNNIVDWAEKLYGQSLSAVTAGMKSLLSGGRQLTMTRTVEALMEARPSPDIETYLLFDPRAPKSSSVVGSHSKSPFKEAIVFMIGGGNYIEYGSLQELAQRQQPVKNIIYGTTEVLTGLELVEQLMELGQKMGLGGLGPSH

SNPs (tot: 27)

Position	A %	C %	G %	T %	Probability
766	80			20	0.995493
768			20	80	0.995493
769			20	80	0.995493
813	16			83	0.994512
815		83	16		0.994512
816	83		16		0.994512
818	16	83			0.994512
932	82	17			1.0
940	82		17		1.0
943		17		82	1.0
944			82	17	1.0
945		82		17	1.0
953	82			17	1.0
954	82	17			1.0
955	11		82		0.999919
956	88	11			0.999952
957			82	11	0.999919
1025	90	10			0.999898
1029		90	10		0.999898
1030	90			10	0.999898
1033		10		90	0.999898
1034	89	10			0.999919
1135	27	72			1.0
1323	88	11			1.0
1324			88	3	0.999079
1328		7	92		0.999664
1460	85			14	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain