SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene27846

Length: 838 nt

Origin of reads: Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene27846 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	GTP cyclohydrolase I, putative (EC:3.5.4.16); K01495 GTP cyclohydrolase I [EC:3.5.4.16]	-	-	42%
FL-Next	tr=Putative uncharacterized protein; Oryza sativa subsp. japonica (Rice).	-	-	43%
Blast2go	gtp cyclohydrolase i	-	-	55%

Source	ECs	Term	Type	e value	Identity
AutoFact	GTP cyclohydrolase I.	EC:3.5.4.16	-	0.0	42%

Source	KEGGs	Term	Type	e value	Identity
AutoFact	Folate biosynthesis	00790		0.0	42%
AutoFact	Metabolic pathways	01100		0.0	42%

Source	InterPros	Term	Type	e value	Identity
Blast2go	GTP cyclohydrolase I/Nitrile oxidoreductase	IPR020602	-	0.0	55%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A3AYB4

Fln msg: Distance to subject end: 119 aas, your sequence is shorter than subject: 279 - 483

Fln protein: RRDLGCHSCLLPFKVRFHIGYVSSSQRVVGLSKLSRVAEVFAKRLQAPQRLADEVSKVLHETIRPLGVAVVLECWHVQFPGVQGNAYKFNSQAEEMPGWLHFPVHRGTGVFEDENSDAWSEFIAVLSLGGVNIERSCSNAYAVQQRSWCPFQVVDGLHLPVINDRTVEHGLRCNGHGIKRISCINSQLKSKLQAKHGVSYSMMIGAVESILIALGEDHKREELRVTPARFVWWLLNFRLTNPALQVNGVDWNGANSVRRGSPPVVHTTLGSTDIDCSHF

Protein Length: 280

Fln nts: CGTCGTGACCTTGGCTGTCACTCATGTTTGTTACCTTTTAAGGTGCGTTTCCATATTGGCTACGTATCATCTAGTCAACGGGTTGTTGGGTTGAGCAAGCTATCCAGGGTTGCAGAGGTATTTGCTAAGAGGCTTCAAGCACCACAGCGATTGGCAGATGAGGTATCCAAGGTATTGCATGAAACCATAAGGCCTTTAGGTGTTGCAGTTGTTTTGGAGTGTTGGCATGTCCAATTTCCAGGAGTACAAGGAAATGCTTACAAATTTAATTCTCAGGCAGAGGAGATGCCTGGGTGGTTGCATTTTCCTGTTCATAGAGGTACTGGTGTTTTTGAAGATGAAAATAGTGATGCATGGAGTGAGTTTATTGCTGTTCTGAGCCTTGGAGGTGTTAATATTGAGCGATCTTGCTCTAATGCATATGCTGTTCAGCAAAGAAGTTGGTGTCCCTTTCAGGTTGTTGATGGCCTGCATCTGCCAGTTATAAATGACAGAACCGTGGAACATGGCTTGAGATGTAATGGTCATGGTATAAAAAGAATTTCTTGTATAAATTCTCAGCTCAAATCAAAATTACAGGCAAAGCATGGAGTCAGCTATTCTATGATGATTGGTGCAGTAGAGTCTATTCTTATTGCTCTTGGTGAAGATCATAAGAGGGAAGAACTCCGGGTTACACCCGCTCGCTTTGTCTGGTGGCTCCTGAACTTTCGATTAACAAACCCAGCATTGCAAGTGAATGGTGTTGATTGGAATGGTGCAAACTCTGTAAGACGAGGGTCTCCTCCTGTAGTACATACAACATTAGGCAGCACAGACATTGATTGTAGTCATTTTC

Fln Alignment:

sp_v1.1_unigene27846___CHSCLLPFKVRFHIGYVSSSQRVVGLSKLSRVAEVFAKRLQAPQRLADEVSKVLHETIRPLGVAVVLECWHVQFPGVQGNAYKFNSQAEEMPGWLHFPVHRGTGVFEDENSDAWSEFIAVLSLGGVNIERSCSNAYAVQQRSWCPFQVVDGLHLPVINDRTVEHGLRCNGHGIKRISCINSQLKSKLQAKHGVSYSMMIGAVESILIALGEDHKREELRVTPARFVWWLLNFRLTNPALQVNGVDWN
A3AYB4_______________CESCLLPFSIQFHVGYVPSGGRVVGLSKLSRVADVFAKRLQNPQRLASEVCGALHASIQPAGVAVALQCWHIPLPE--------NLKCKTLQGWISTSHSSRSGVFEGESSSFWNDFSALLKLRGIDMERDSHSA----SIAWCPLRSHD---VPV-----------CNGH------CKKATTNGAISPKSVPAPSNMVSAVSSMLLSLGEDPFRKELVGTPQRYVQWLMKFRACNLDVKLNGFTLN

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
572	83			16	0.994512
573	83		16		0.994512
575			14	85	0.993533
579	14			85	0.993533
580	85	14			0.993533
585	14			85	0.993533
586			14	85	0.993533
587			14	85	0.993533
588		85		14	0.993533
590	14			85	0.993533
591		14		85	0.993533
596			14	85	0.993533
629	83			16	0.994512
631		83	16		0.994512
639		83	16		0.994512
641		16		83	0.994512
644	83		16		0.994512
646			83	16	0.994512
648	16	83			0.994512
649		16		83	0.994512
650			16	83	0.994512
652		16		83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain