SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene27756

Length: 937 nt

Origin of reads: Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene27756

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Sugar transporter, putative n=1 Tax=Ricinus communis RepID=B9S203_RICCO	-	-	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	64%
Blast2go	sugar transporter family protein	-	-	80%

Source	GOs	Term	Type	Identity
Blast2go	transporter activity	GO:0005215	Molecular Function	80%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	80%
Blast2go	plasma membrane	GO:0005886	Cellular Component	80%

Source	InterPros	Term	Type	Identity
Blast2go	Sugar/inositol transporter	IPR003663	-	80%
Blast2go	General substrate transporter	IPR005828	-	80%
Blast2go	Sugar transporter, conserved site	IPR005829	-	80%
Blast2go	Major facilitator superfamily domain, general substrate transporter	IPR016196	-	80%
Blast2go	Major facilitator superfamily domain	IPR020846	-	80%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NWB2

Fln msg: Overlapping hits, possible frame ERROR between 732 and 725, Distance to subject end: 230 aas, your sequence is shorter than subject: 289 - 521

Fln protein: MASEAEIKEQSEASTSLFGWINRRKVKKSAASWQSEDTKDKPLIAKRDSDESYALSAIILPFLFPALGGLLYGYDIGATSGADISIESAELSGTDWYNLSSIANGVVVSGSLFGALIGSIIAFNVADILGRRRELIVASLLYAIGALISALALDLAMLIIGRLIYGFGIGLAMHAAPLYIAETSPPQIRGRLISLKEFFIVLGMLLGYLVSSLAVDAxxxxWRYMYGASIPIALIMTLGMWWLPPTPRWILLCAVQGKGNLEELKRKAASILCRLRGRTLGDMDSDEQI

Protein Length: 290

Fln nts: GAAGAATTTTAATGAGAACACTTCTGGTGGACTGGACTTCTGAAGACAGGTAAGAAAACTTTCGTCGTATCA_-_ATGGCCTCTGAGGCAGAGATTAAGGAACAGAGCGAAGCAAGTACTTCGCTGTTTGGATGGATTAATCGAAGAAAGGTCAAAAAGTCAGCTGCTTCATGGCAATCTGAGGATACAAAGGACAAGCCCCTCATCGCCAAACGAGACTCGGATGAATCGTATGCCTTGTCTGCAATTATTTTGCCATTTTTATTTCCTGCCCTAGGTGGTTTACTTTATGGCTATGATATTGGTGCTACATCTGGTGCTGATATTTCGATAGAGTCAGCTGAACTTAGCGGAACAGATTGGTACAATTTGTCATCTATAGCAAATGGTGTCGTGGTTAGTGGATCCCTTTTTGGGGCTCTAATTGGGTCTATTATCGCTTTCAATGTCGCAGATATCTTAGGTAGACGGAGGGAATTAATTGTTGCATCTCTGTTATATGCAATCGGAGCTTTAATTTCAGCGTTGGCACTTGATCTTGCTATGTTAATAATTGGTCGGCTGATATATGGCTTTGGTATTGGCTTGGCTATGCATGCAGCTCCATTGTACATTGCAGAGACATCTCCACCTCAGATTCGAGGGAGGCTTATATCTTTAAAAGAGTTTTTCATAGTTTTAGGAATGCTGTTGGGTTACCTTGTTAGTAGTCTAGCAGTTGATGCGxxxxxxxxxxxxTGGCGCTACATGTATGGAGCTAGTATACCAATTGCTCTAATAATGACCCTTGGAATGTGGTGGCTGCCACCAACCCCACGCTGGATCCTTCTTTGTGCTGTTCAGGGTAAAGGGAATCTAGAAGAGCTTAAAAGAAAGGCAGCTTCTATATTATGTCGATTAAGAGGTCGTACTTTGGGCGATATGGACTCTGATGAGCAAATA

Fln Alignment:

sp_v1.1_unigene27756___ASEAEIKEQSEASTSLFGWINRRK--VKKSAASWQSEDTKDKPLIAKRDSDESYALSAIIXXXXXXXXXXXXXXXDIGATSGADISIESAELSGTDWYNLSSIANGVVVSGSLFGALIGSIIAFNVADILGRRRELIVASLLYAIGALISALALDLAMLIIGRLIYGFGIGLAMHAAPLYIAETSPPQIRGRLISLKEFFIVLGMLLGYLVSSLAVD-xxxxxYMYGASIPIALIMTLGMWWLPPTPRWILLCAVQGKGNLEELKRKAASILCRLRGRTLGDMDSDEQI
A9NWB2_______________ANDRDLLRPSESGFSFFGWTRQRKMQVKASSADSNIEGTRE-PLISSKESPEVFTWSALILPFLFPALGGVLFGYDIGATSGASVSLQSAELSGTTWYNLSSIQTGLVVSGSLYGALCGSLIAFNVSDFLGRRRELIVAAALYLSGALITALAPGLPVLIVGRLLFGFGIGLAMHAAPLYISETSPSQIRGTLVSLKELFIVLGILLGYLMGNLEIDVxxxxxYMYGLSTPIAVILGIGMWWLPPSPRWLLLQAVRGKGNLEELKERAIFALSRLRGRPMGDTASDVQI

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
390		75		25	0.996473
654	75	25			0.996473
655			25	75	0.996473
657	25			75	0.996473
658			25	75	0.996473
660	75		25		0.996473
662	75		25		0.996473
663	75			25	0.996473
666		25	75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain