SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene27752

Length: 517 nt

Origin of reads: Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene27752
CTTTGCCGTTTTGCATAGACAGGATGATATCAAGGCGTCATGGCTTCCTCGCCCAGCCATTTGCTTCAGCGTTGATAAGGAACTGGTTTATGAACCCTTCTACGCTGATTTTGGACCTCTTAACCTTGCTTGTACCTATCGGTTCTGCTGGAAGCTTCATGAACTCTTGAAGGAAGGAGAGGCACATGGACACTGTGTATGCTTCTACTGCAGTTCAGATCCTAAGAAGAAGGCAAACGCTGCTGTTTTGCTTGGAGCTTACTTGGTGCTCTTTGAAGACTGGGATCCTGAAGTTGCTTACACTCCACTGGCACTATTTGAATCATATTTGCCATTTCGGGATCCTACTTGTGGAATTTCAACATATCATCTTTCCGTTCTTGATTGCCTCAGGGTAAAATTCTCTAGAATGCTATTTGCTATTTCCAGGTTTGTTTTTATTAGATTGATAAGGCAAGTTGTTAAATTCGGCAACTAGGGCCAAACTCCACCTTGGACAGCTCAGATGATGCAGCTG

Ace file of the UniGene sp_v1.1_unigene27752 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	CDC14; cell division cycle protein 14 (EC:3.1.3.48); K06639 cell division cycle 14 [EC:3.1.3.48]	-	-	4.0e-28	50%
FL-Next	tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss).	-	-	0.0	74%
Blast2go	cell division cycle protein 14	-	-	0.0	68%

Source	ECs	Term	Type	e value	Identity
AutoFact	Protein-tyrosine-phosphatase.	EC:3.1.3.48	-	4.0e-28	50%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: D8RE91

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 147 aas, your sequence is shorter than subject: 159 - 341

Fln protein: FAVLHRQDDIKASWLPRPAICFSVDKELVYEPFYADFGPLNLACTYRFCWKLHELLKEGEAHGHCVCFYCSSDPKKKANAAVLLGAYLVLFEDWDPEVAYTPLALFESYLPFRDPTCGISTYHLSVLDCLRVKFSRMLFAISRFVFIRLIRQVVKFGN*

Protein Length: 160

Fln nts: CTTTGCCGTTTTGCATAGACAGGATGATATCAAGGCGTCATGGCTTCCTCGCCCAGCCATTTGCTTCAGCGTTGATAAGGAACTGGTTTATGAACCCTTCTACGCTGATTTTGGACCTCTTAACCTTGCTTGTACCTATCGGTTCTGCTGGAAGCTTCATGAACTCTTGAAGGAAGGAGAGGCACATGGACACTGTGTATGCTTCTACTGCAGTTCAGATCCTAAGAAGAAGGCAAACGCTGCTGTTTTGCTTGGAGCTTACTTGGTGCTCTTTGAAGACTGGGATCCTGAAGTTGCTTACACTCCACTGGCACTATTTGAATCATATTTGCCATTTCGGGATCCTACTTGTGGAATTTCAACATATCATCTTTCCGTTCTTGATTGCCTCAGGGTAAAATTCTCTAGAATGCTATTTGCTATTTCCAGGTTTGTTTTTATTAGATTGATAAGGCAAGTTGTTAAATTCGGCAACTAGGGCCAAACTCCACCTTGGACAGCTCAGATGATGCAGCTG

Fln Alignment:

sp_v1.1_unigene27752___FAVLHRQDDIKASWLPRPAICFSVDKELVYEPFYADFGPLNLACTYRFCWKLHELLKEGEAHGHCVCFYCSSDPKKKANAAVLLGAYLVLFEDWDPEVAYTPLALFESYLPFRDPTCGISTYHLSVLDCLR
D8RE91_______________FAALQRPDDLKGSWLPRPALCFSVDNELIYEPFFQDFGPLNMACTYRFCWKLHGLLQDARAHGRCVCFCTSIETKTKSNAAVLLGAYLVLFESWEPDAAYSPLALFEPYFPFRDPTCGISTYHLTVLDCIQ

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
432	85	14			0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain