SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene27747

Length: 2503 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene27747
GGGGATTGGCCGAGAAGTGTGCAGGGGTGCAGAGGCCGGGCTTAAAATTCGGATCTCTGATAGGGTCGGCGACCGGGCCGTAATATAGCCCAGCAAGAAGTCCGGGCAGTCCTCGGTTCTTTGAACGGCCCGAGCCGTGTTAAAACCCAACTTCTGCGTTAACCAGGCTTGCTCATTTCACTTTCAAATCTGCTGTCACTTCAAATTTTGAAGAAAAGAATCAGAGCCTTCGTGGAAGTGCCAGCTGCACTCTGTAGAAGGAATAATTCCATCTGCTGGTCTGTAGACAACTATCTCGCACACACAAACCCACGCGGCGCAATGGCGAATGCAGAGGGAGGACGCAAATAATAGGAGGCAGGGGAGTGGTTTTAAAGAAAGCGAATTGGAAAACTGGGTAGCGAGAGGGATCGGAGATTTTGGATCACAATGCAGGTTCCGGGCTTTCTCGCTCTGGGAGGTCGCAGGATTCGGCAGATCCAGAGGGCAATGCAAAATGCCAAGGTCACGCTGCTGTGCCTGTTCGTGACGGTGTTGGTTTTGAGAGGCACAATCGGTGCTGGGAAGTTTGGGACGCCTGAGCAAGATTTTTATGAGATTCGTGAGCATCTGATCGTGGGAAGGCGAGGGGAGCCGCACAGGGTCCTGACTGAGGTCGTTGCAGAGAGTTCCAACAACAAGACACCCCCGGTGGTAGAAGAAGAAGTGGAAGAACCGGATGTGGAGCGAGATCCGAGCGTGCCATACAGCTTCGGCCCCAAGATCTCTGACTGGGACGACCAGCGCAGTGAATGGCTTGCGGAAAATCCCGCATTCCCCAATTTTTTGCCCGGTGGCCGTCCTCGGATTTTGCTGGTCACGGGGTCGGCTCCGGCCCCGTGTGAGAGTCCTGTGGGAGATCATTTACTCTTGAAGTCCATCAAGAACAAGATCGATTACTGCCGTCTTCACGGCATCGAGATCTTTTACAACATGGCACATTTGGACCATGAGATGTCTGGTTTCTGGGCCAAGCTTCCGCTCATCCGCAAGCTTATGCTCACCCACCCTGAGGTGGAATTCATCTGGTGGATGGACAGCGACGCCATGTTCACCGACATGGTCTTCGAGCTCCCCTTTGAGCGCTACAAGAATCACAACTTCATCATGCACGGATGGGAGGAGCTCGTCTACAATCGCAAGAATTGGATTGGCCTTAACACCGGTAGCTTCTTGCTTCGTAACTGCCAGTGGTCGCTCGACATCCTGGACGCATGGGCGCCTATGGGACCCAAGGGGAAAATTCGTACCGAAGCCGGGAAACTGCTCACGCGCTCGCTCGTTGGCCGGCCTGAGTTCGAAGCCGACGACCAGTCGGCATTGGTGTATTTGCTAATCACGCAGAGGGAAAAATGGGGGGATAAGGTCTACCTGGAGAGCGCTTACTATCTTCACGGTTACTGGGGCATTCTCGTGGACAAATATGAGGAGATGATGGAGAAGCACCACCCGGGGCTTGGGGATCACCGCTGGCCGCTGGTCACTCACTTTGTCGGGTGCAAACCCTGCGGCAAAGTTGGGGATTACCCTGTGGCACAGTGTTTGAGACAGATGGAGCGAGCCTTTAATTTCGGAGATAACCAGATCCTACAGATCTACGGCTTTACTCACAAGAGTCTCAGCAGCCGCGGCGTAAAAAGAACCCGTAACGACACAGACAAGCCTCTGGAAGTCAAGGATGAGCTCGGTCTTCTGCACCCTGCTTTCAAGGCCGTCAAGGTTTGAATTTGTCCACACATCGATTGGTAAGCCCTTACATTTTTTCCTCTGCACTTCTTTGGCTGCATCAAGAATTTTGTCCGGCGCCTCTTGGCCTCGGCTTTCATGGCAGCAGCTTTATAATTAGATTGTAAAGCATGTGTATGTTTTGTACTAGGGTTCCATTCAAGCCTTCCCCCCATTGTGATTTTGGGAATAAATCTGTGTTAGAAATGCTTTGAACATACCCATGGAAGCACAGGGATCGACCTGGAGCTTTGTCAATGACATTGTAAGTAGAATTGCAGTCAGGTTAAAGACTGTATCATTATTTAGTATTTATCTATTATTGCTTCCAGAAAACCAATGTGTTTTTGGTTGTCCGTTGGTCTAACGGGCAGAGATTTCCATTTTGATTACTTCTAACAACCAATATATTTTGGGTGTCGGTTGGTCTTACAAACAGATTTCGCAAAATTGATTTTTTTTAATCCTCTTTCTTTTACTTCTCTTTGTAATTATAGTTCTTCTGAATGCCCACCCTTGCTGTCAATCATTATACTCTGCCATGTCTTGCATCCATTTTTTCTCTTGGAAAAAAAGTTTTCTAAAAGTGATAGTCATGAGTGACTTGACTGAATCACGAGTGTCATGTGAACATTGAAAACAAAGGATTTTCAAAGATTCGAAATGGATCAAATATGATTGTATCCAATCCTTAATTGATTATTGTGTTTATTTTTGATGGTTGCTGTTACTCCTGGTG

Ace file of the UniGene sp_v1.1_unigene27747

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Alpha-1,6-xylosyltransferase n=2 Tax=Pinaceae RepID=Q5TIN4_PINTA	-	-	92%
FL-Next	tr=Alpha-1,6-xylosyltransferase; Pinus taeda (Loblolly pine).	-	-	99%
Blast2go	glycosyltransferase 5	-	-	83%

Source	ECs	Term	Type	e value	Identity
Blast2go	Xyloglucan 6-xylosyltransferase.	EC:2.4.2.39	-	0.0	83%

Source	GOs	Term	Type	Identity
Blast2go	root hair elongation	GO:0048767	Biological Process	83%
Blast2go	xyloglucan biosynthetic process	GO:0009969	Biological Process	83%
Blast2go	UDP-xylosyltransferase activity	GO:0035252	Molecular Function	83%
Blast2go	xyloglucan 6-xylosyltransferase activity	GO:0033843	Molecular Function	83%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: Q5TIN4

Fln msg:

Fln protein: MQVPGFLALGGRRIRQIQRAMQNAKVTLLCLFVTVLVLRGTIGAGKFGTPEQDFYEIREHLIVGRRGEPHRVLTEVVAESSNNKTPPVVEEEVEEPDVERDPSVPYSFGPKISDWDDQRSEWLAENPAFPNFLPGGRPRILLVTGSAPAPCESPVGDHLLLKSIKNKIDYCRLHGIEIFYNMAHLDHEMSGFWAKLPLIRKLMLTHPEVEFIWWMDSDAMFTDMVFELPFERYKNHNFIMHGWEELVYNRKNWIGLNTGSFLLRNCQWSLDILDAWAPMGPKGKIRTEAGKLLTRSLVGRPEFEADDQSALVYLLITQREKWGDKVYLESAYYLHGYWGILVDKYEEMMEKHHPGLGDHRWPLVTHFVGCKPCGKVGDYPVAQCLRQMERAFNFGDNQILQIYGFTHKSLSSRGVKRTRNDTDKPLEVKDELGLLHPAFKAVKV*

Protein Length: 446

Fln nts: GGGGATTGGCCGAGAAGTGTGCAGGGGTGCAGAGGCCGGGCTTAAAATTCGGATCTCTGATAGGGTCGGCGACCGGGCCGTAATATAGCCCAGCAAGAAGTCCGGGCAGTCCTCGGTTCTTTGAACGGCCCGAGCCGTGTTAAAACCCAACTTCTGCGTTAACCAGGCTTGCTCATTTCACTTTCAAATCTGCTGTCACTTCAAATTTTGAAGAAAAGAATCAGAGCCTTCGTGGAAGTGCCAGCTGCACTCTGTAGAAGGAATAATTCCATCTGCTGGTCTGTAGACAACTATCTCGCACACACAAACCCACGCGGCGCAATGGCGAATGCAGAGGGAGGACGCAAATAATAGGAGGCAGGGGAGTGGTTTTAAAGAAAGCGAATTGGAAAACTGGGTAGCGAGAGGGATCGGAGATTTTGGATCACA_-_ATGCAGGTTCCGGGCTTTCTCGCTCTGGGAGGTCGCAGGATTCGGCAGATCCAGAGGGCAATGCAAAATGCCAAGGTCACGCTGCTGTGCCTGTTCGTGACGGTGTTGGTTTTGAGAGGCACAATCGGTGCTGGGAAGTTTGGGACGCCTGAGCAAGATTTTTATGAGATTCGTGAGCATCTGATCGTGGGAAGGCGAGGGGAGCCGCACAGGGTCCTGACTGAGGTCGTTGCAGAGAGTTCCAACAACAAGACACCCCCGGTGGTAGAAGAAGAAGTGGAAGAACCGGATGTGGAGCGAGATCCGAGCGTGCCATACAGCTTCGGCCCCAAGATCTCTGACTGGGACGACCAGCGCAGTGAATGGCTTGCGGAAAATCCCGCATTCCCCAATTTTTTGCCCGGTGGCCGTCCTCGGATTTTGCTGGTCACGGGGTCGGCTCCGGCCCCGTGTGAGAGTCCTGTGGGAGATCATTTACTCTTGAAGTCCATCAAGAACAAGATCGATTACTGCCGTCTTCACGGCATCGAGATCTTTTACAACATGGCACATTTGGACCATGAGATGTCTGGTTTCTGGGCCAAGCTTCCGCTCATCCGCAAGCTTATGCTCACCCACCCTGAGGTGGAATTCATCTGGTGGATGGACAGCGACGCCATGTTCACCGACATGGTCTTCGAGCTCCCCTTTGAGCGCTACAAGAATCACAACTTCATCATGCACGGATGGGAGGAGCTCGTCTACAATCGCAAGAATTGGATTGGCCTTAACACCGGTAGCTTCTTGCTTCGTAACTGCCAGTGGTCGCTCGACATCCTGGACGCATGGGCGCCTATGGGACCCAAGGGGAAAATTCGTACCGAAGCCGGGAAACTGCTCACGCGCTCGCTCGTTGGCCGGCCTGAGTTCGAAGCCGACGACCAGTCGGCATTGGTGTATTTGCTAATCACGCAGAGGGAAAAATGGGGGGATAAGGTCTACCTGGAGAGCGCTTACTATCTTCACGGTTACTGGGGCATTCTCGTGGACAAATATGAGGAGATGATGGAGAAGCACCACCCGGGGCTTGGGGATCACCGCTGGCCGCTGGTCACTCACTTTGTCGGGTGCAAACCCTGCGGCAAAGTTGGGGATTACCCTGTGGCACAGTGTTTGAGACAGATGGAGCGAGCCTTTAATTTCGGAGATAACCAGATCCTACAGATCTACGGCTTTACTCACAAGAGTCTCAGCAGCCGCGGCGTAAAAAGAACCCGTAACGACACAGACAAGCCTCTGGAAGTCAAGGATGAGCTCGGTCTTCTGCACCCTGCTTTCAAGGCCGTCAAGGTTTGA___ATTTGTCCACACATCGATTGGTAAGCCCTTACATTTTTTCCTCTGCACTTCTTTGGCTGCATCAAGAATTTTGTCCGGCGCCTCTTGGCCTCGGCTTTCATGGCAGCAGCTTTATAATTAGATTGTAAAGCATGTGTATGTTTTGTACTAGGGTTCCATTCAAGCCTTCCCCCCATTGTGATTTTGGGAATAAATCTGTGTTAGAAATGCTTTGAACATACCCATGGAAGCACAGGGATCGACCTGGAGCTTTGTCAATGACATTGTAAGTAGAATTGCAGTCAGGTTAAAGACTGTATCATTATTTAGTATTTATCTATTATTGCTTCCAGAAAACCAATGTGTTTTTGGTTGTCCGTTGGTCTAACGGGCAGAGATTTCCATTTTGATTACTTCTAACAACCAATATATTTTGGGTGTCGGTTGGTCTTACAAACAGATTTCGCAAAATTGATTTTTTTTAATCCTCTTTCTTTTACTTCTCTTTGTAATTATAGTTCTTCTGAATGCCCACCCTTGCTGTCAATCATTATACTCTGCCATGTCTTGCATCCATTTTTTCTCTTGGAAAAAAAGTTTTCTAAAAGTGATAGTCATGAGTGACTTGACTGAATCACGAGTGTCATGTGAACATTGAAAACAAAGGATTTTCAAAGATTCGAAATGGATCAAATATGATTGTATCCAATCCTTAATTGATTATTGTGTTTATTTTTGATGGTTGCTGTTACTCCTGGTG

Fln Alignment:

sp_v1.1_unigene27747___MQVPGFLALGGRRIRQIQRAMQNAKXXXXXXXXXXXXXRGTIGAGKFGTPEQDFYEIREHLIVGRRGEPHRVLTEVVAESSNNKTXXXXXXXXXXXXXXXXXXXXYSFGPKISDWDDQRSEWLAENPAFPNFLPGGRPRILLVTGSAPAPCESPVGDHLLLKSIKNKIDYCRLHGIEIFYNMAHLDHEMSGFWAKLPLIRKLMLTHPEVEFIWWMDSDAMFTDMVFELPFERYKNHNFIMHGWEELVYNRKNWIGLNTGSFLLRNCQWSLDILDAWAPMGPKGKIRTEAGKLLTRSLVGRPEFEADDQSALVYLLITQREKWGDKVYLESAYYLHGYWGILVDKYEEMMEKHHPGLGDHRWPLVTHFVGCKPCGKVGDYPVAQCLRQMERAFNFGDNQILQIYGFTHKSLSSRGVKRTRNDTDKPLEVKDELGLLHPAFKAVKV
Q5TIN4_______________MQVPGFLALGGRRIRQIQRAMQNAKVTLLCLFVTVLVLRGTIGAGKFGTPEQDFNEIREHLIVGRRGEPHRVLTEVVAESSNNKTPPVVEEEVEEPDVERDPSVPYSFGPKISDWDDQRSEWLAENPAFPNFLPGGRPRILLVTGSAPAPCESPVGDHLLLKSIKNKIDYCRLHGIEIFYNMAHLDHEMSGFWAKLPLIRKLMLTHPEVEFIWWMDSDAMFTDMVFELPFERYKNHNFIMHGWEELVYNRKNWIGLNTGSFLLRNCQWSLDILDAWAPMGPKGKIRTEAGKLLTRSLVGRPEFEADDQSALVYLLITQREKWGDKVYLESAYYLHGYWGILVDKYEEMMEKHHPGLGDHRWPLVTHFVGCKPCGKVGDYPVAQCLRQMERAFNFGDNQILQIYGFTHKSLSSRGVKRTRNDTDKPLEVKDELGLLHPAFKAVKV

SNPs (tot: 44)

Position	A %	C %	G %	T %	Probability
379	66		33		0.997452
380	66		33		0.997452
382		66	33		0.997452
406	85		14		0.993533
425		83		16	0.994512
453			87	12	0.992554
564	37		62		1.0
567		11	88		0.923564
568		11		88	0.923564
574	88	11			0.923564
575		88		11	0.923564
577		88		11	0.923564
579	11			88	0.923564
580		11	88		0.923564
581	90			10	0.90298
582		10	90		0.90298
583	10	90			0.90298
628	10		90		0.90298
904		5		94	0.998744
983		4		95	0.995881
1275			88	11	0.923564
1277	11		88		0.923564
1278		11	88		0.923564
1280	88		11		0.923564
1281	88		11		0.923564
1282	88	11			0.923564
1283		11		88	0.923564
1284	11			88	0.923564
1407		80		20	0.995493
1591	83		16		0.994512
1592			16	83	0.994512
1633	87	12			0.992554
1634	12			87	0.992554
1637	87	12			0.992554
1638	12	87			0.992554
1748	85			15	1.0
1752	5	85		10	0.999793
1757	90	10			0.999898
1798			2	92	0.98868
1929		92	2		0.98868
1933	27	66		2	1.0
2115		33	66		0.997452
2363	90		10		0.90298
2396		70		30	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain