SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene27739

Length: 2386 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene27739
CGAAAGGTGGGAAATCAGTATTTGACTCGTGAGGAGAATGTAGAATGTTGAGCCCGCGCGCATCATCGATCAAACGGGATGAATCTGAATCCGTTTCTTTTGTGGGGATCACACCAGGATGGGATAACAGAGCCCAAAAATTGTAGCAAAAACATATTGGAAACAACATAGAAATATGATATTAGGTGCCAGGGGAATTACGATTTCTTCAAAGCAGATCCTTTTCCAGATCTCAATGGAGCCACTGGTGGGAGATAAGTACAGATTGGGGCGCAAAATTGGCAGCGGTTCATTCGGAGAAATCTATCTCGGAGTAAATATTCAGACAAATGAGAAGTGGCCATAAAACTGGAGAATGCAAAAACAAAGCACCCACAACTTCTATATGAGTCCAAATTGTACAAGATTCTCCAAGGAGGAACTGGTGTTCCGAATATAAGATGGTCCGGTGTTGAAGGTGATTATAATGTCATGGTCATAGATATACTTGGACCTAGTCTCGAGGATTTATTTAACTACTGCAACCGGAAATTCTCATTGAAGACTGTTCTGATGCTTGCTGATCAACTGATTAACAGGATTGAATATGTGCATTCAAAGAGTTTCCTTCATCGAGATATTAAGCCTGACAATTTCCTTATGGGGCTTGGCCGCAGAGCAAATCAGTGTTACATCATAGATTTTGGGCTTGCCAAAAAATATCGGGACCCAGCAACTCATAAGCATATTCCTTACAGGGAAAATAAAAATCTTACAGGGACTGCTCGTTATGCTAGCATCAATACTCATCTTGGAATAGAGCAAAGTAGGAGAGATGATCTAGAGTCCTTGGGATACATGCTTATGTATTTCTTGAGGGGAAGCCTTCCATGGCAGGGATTGAAAGCTGGGACCAAAAAGCAGAAGTATGAGAAAATAAGTGAGAAAAAAATGTCAACTCCAATTGAGGTGCTGTGCAAATCTTATCCGAAGGAGTTTGCATCATTTTTCCATTATTGTCGGTCTTTGCGATTCGATGACAAGCCAGATTATGCTTACCTGAAGGTTTTATTTCGTGAACTTTTCATTCGTGAGGGTTTTCAGTTTGATTTTGTATATGATTGGACTATATTGAAGTACCAGCAGTCCCAGATTGCTACTGCTGACCCTCGTTCCCATCCTGCTCTTGTAGCTGGAAAGTTTGGCACAGGGGCTGGTGCTTCAGAGAGAATTTCAGCGGGGCAGGATGGCCGTGAGCGAAAGTCTGGAACAGGTGAAGGATCTCATCGAAGATCTAATGGGGGTAATGGTAATCTTCACAATATTGGTTCAGCAGATCAATATAGAAACAAGAATTTAGGGCTGGATGGCCCTTCAACATCAAAAGAAGTCCCAGACAGTGACCGTGGGCGTTCCTCCTTTACACGAGCTGGGAGTTCATCCAGGAGGGCAGTTGCTTCAAGCAGGCCGACTACAGCTGCTGATAATAGTGAGCGCTCCCGTTCCCTAACAAGTAGATTTGTTCCCAGGAGTCTTCGCTCTTCAAGTGCACAGCGCAGTTCAACACCAGCTACATCTGAGCCGAGAAGGATATTTGGTATTCGAAATGCATCAATGAAGGGCACGCCTGAGGATTCACTGAGGAGTTTTCAGTACTTGTCTGTAGATTCAGGACAGAAGCAGTGATAAGTAATTTGTCCAATTTTATGATTTTCGGGGAATTGAAAAGGTCTGTTCTAGCTTGGTATATCTAATTGGCCAATTCCGCTGTCATTTGTTCTTGCTGTTTGAGATTAAGTCCTTACAAGAGGAATATATTTAAAATTAATCATAGGCTGGCCTTGATGGGGAAAGCAAATTCATACGTTTCGTGCATCTACATCGAGGATGAGCAGTTAAAAGACAAAGGAAAGCAGCCGAAGAGAGTGCATGCTTGACCAAACATTGTCTCAATGGGCCCTATTTTAAATTGTTGCTTGCCATTCATCATTTCTTGGGCATGTAATTCGTAGTCAACTCAGACAGCATACAACAAAACCCCAAGCTTCTATCCTGATTAGCTGTTTGGTTTCTCTATTTTACATAAATACGTATCGAGCTCTCATTTATCTCAATTTGGGTCTATCGAATTTAAAATAGAAGTTATTGTATGGTTAAATATGGTTGAAATCACTGCCTGTCCATGCAGAATCGAAAAAATGTTCTGTGTACCTTCCAAGGCAACTGCCAATTTGTTGAGTTTAATGTATTTGTACCTGTCTTGCTCAGAATGCTTGCATATGTCCATCTCTGACTTGGCCTTCCAAATCAGATTACTGTGAGATAAAGTTTGAAAGTAAGAAGAGACAGAATGGAATAGTGGCTTGTTGTAAAGGGAAATATCTATTTCTTTTCATTTTTCACCCAT

Ace file of the UniGene sp_v1.1_unigene27739

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	casein kinase, putative	-	-	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	85%
Blast2go	protein	-	-	89%

Source	GOs	Term	Type	e value	Identity
Blast2go	cytoplasm	GO:0005737	Cellular Component	0.0	89%
Blast2go	nucleus	GO:0005634	Cellular Component	0.0	89%

Source	InterPros	Term	Type	Identity
Blast2go	Protein kinase, catalytic domain	IPR000719	-	89%
Blast2go	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	89%
Blast2go	Serine/threonine-protein kinase, active site	IPR008271	-	89%
Blast2go	Protein kinase-like domain	IPR011009	-	89%
Blast2go	Serine/threonine-protein kinase-like domain	IPR017442	-	89%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUC1

Fln msg: Overlapping hits, possible frame ERROR between 337 and 334,

Fln protein: MILGARGITISSKQILFQISMEPLVGDKYRLGRKIGSGSFGEIYLGVNIQTNxxxAIKLENAKTKHPQLLYESKLYKILQGGTGVPNIRWSGVEGDYNVMVIDILGPSLEDLFNYCNRKFSLKTVLMLADQLINRIEYVHSKSFLHRDIKPDNFLMGLGRRANQCYIIDFGLAKKYRDPATHKHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYMLMYFLRGSLPWQGLKAGTKKQKYEKISEKKMSTPIEVLCKSYPKEFASFFHYCRSLRFDDKPDYAYLKVLFRELFIREGFQFDFVYDWTILKYQQSQIATADPRSHPALVAGKFGTGAGASERISAGQDGRERKSGTGEGSHRRSNGGNGNLHNIGSADQYRNKNLGLDGPSTSKEVPDSDRGRSSFTRAGSSSRRAVASSRPTTAADNSERSRSLTSRFVPRSLRSSSAQRSSTPATSEPRRIFGIRNASMKGTPEDSLRSFQYLSVDSGQKQ*

Protein Length: 498

Fln nts: CGAAAGGTGGGAAATCAGTATTTGACTCGTGAGGAGAATGTAGAATGTTGAGCCCGCGCGCATCATCGATCAAACGGGATGAATCTGAATCCGTTTCTTTTGTGGGGATCACACCAGGATGGGATAACAGAGCCCAAAAATTGTAGCAAAAACATATTGGAAACAACATAGAAAT_-_ATGATATTAGGTGCCAGGGGAATTACGATTTCTTCAAAGCAGATCCTTTTCCAGATCTCAATGGAGCCACTGGTGGGAGATAAGTACAGATTGGGGCGCAAAATTGGCAGCGGTTCATTCGGAGAAATCTATCTCGGAGTAAATATTCAGACAAATxxxxxxxxxGCCATAAAACTGGAGAATGCAAAAACAAAGCACCCACAACTTCTATATGAGTCCAAATTGTACAAGATTCTCCAAGGAGGAACTGGTGTTCCGAATATAAGATGGTCCGGTGTTGAAGGTGATTATAATGTCATGGTCATAGATATACTTGGACCTAGTCTCGAGGATTTATTTAACTACTGCAACCGGAAATTCTCATTGAAGACTGTTCTGATGCTTGCTGATCAACTGATTAACAGGATTGAATATGTGCATTCAAAGAGTTTCCTTCATCGAGATATTAAGCCTGACAATTTCCTTATGGGGCTTGGCCGCAGAGCAAATCAGTGTTACATCATAGATTTTGGGCTTGCCAAAAAATATCGGGACCCAGCAACTCATAAGCATATTCCTTACAGGGAAAATAAAAATCTTACAGGGACTGCTCGTTATGCTAGCATCAATACTCATCTTGGAATAGAGCAAAGTAGGAGAGATGATCTAGAGTCCTTGGGATACATGCTTATGTATTTCTTGAGGGGAAGCCTTCCATGGCAGGGATTGAAAGCTGGGACCAAAAAGCAGAAGTATGAGAAAATAAGTGAGAAAAAAATGTCAACTCCAATTGAGGTGCTGTGCAAATCTTATCCGAAGGAGTTTGCATCATTTTTCCATTATTGTCGGTCTTTGCGATTCGATGACAAGCCAGATTATGCTTACCTGAAGGTTTTATTTCGTGAACTTTTCATTCGTGAGGGTTTTCAGTTTGATTTTGTATATGATTGGACTATATTGAAGTACCAGCAGTCCCAGATTGCTACTGCTGACCCTCGTTCCCATCCTGCTCTTGTAGCTGGAAAGTTTGGCACAGGGGCTGGTGCTTCAGAGAGAATTTCAGCGGGGCAGGATGGCCGTGAGCGAAAGTCTGGAACAGGTGAAGGATCTCATCGAAGATCTAATGGGGGTAATGGTAATCTTCACAATATTGGTTCAGCAGATCAATATAGAAACAAGAATTTAGGGCTGGATGGCCCTTCAACATCAAAAGAAGTCCCAGACAGTGACCGTGGGCGTTCCTCCTTTACACGAGCTGGGAGTTCATCCAGGAGGGCAGTTGCTTCAAGCAGGCCGACTACAGCTGCTGATAATAGTGAGCGCTCCCGTTCCCTAACAAGTAGATTTGTTCCCAGGAGTCTTCGCTCTTCAAGTGCACAGCGCAGTTCAACACCAGCTACATCTGAGCCGAGAAGGATATTTGGTATTCGAAATGCATCAATGAAGGGCACGCCTGAGGATTCACTGAGGAGTTTTCAGTACTTGTCTGTAGATTCAGGACAGAAGCAGTGA___TAAGTAATTTGTCCAATTTTATGATTTTCGGGGAATTGAAAAGGTCTGTTCTAGCTTGGTATATCTAATTGGCCAATTCCGCTGTCATTTGTTCTTGCTGTTTGAGATTAAGTCCTTACAAGAGGAATATATTTAAAATTAATCATAGGCTGGCCTTGATGGGGAAAGCAAATTCATACGTTTCGTGCATCTACATCGAGGATGAGCAGTTAAAAGACAAAGGAAAGCAGCCGAAGAGAGTGCATGCTTGACCAAACATTGTCTCAATGGGCCCTATTTTAAATTGTTGCTTGCCATTCATCATTTCTTGGGCATGTAATTCGTAGTCAACTCAGACAGCATACAACAAAACCCCAAGCTTCTATCCTGATTAGCTGTTTGGTTTCTCTATTTTACATAAATACGTATCGAGCTCTCATTTATCTCAATTTGGGTCTATCGAATTTAAAATAGAAGTTATTGTATGGTTAAATATGGTTGAAATCACTGCCTGTCCATGCAGAATCGAAAAAATGTTCTGTGTACCTTCCAAGGCAACTGCCAATTTGTTGAGTTTAATGTATTTGTACCTGTCTTGCTCAGAATGCTTGCATATGTCCATCTCTGACTTGGCCTTCCAAATCAGATTACTGTGAGATAAAGTTTGAAAGTAAGAAGAGACAGAATGGAATAGTGGCTTGTTGTAAAGGGAAATATCTATTTCTTTTCATTTTTCACCCAT

Fln Alignment:

sp_v1.1_unigene27739___MEPLVGDKYRLGRKIGSGSFGEIYLGVNIQTNExVAIKLENAKTKHPQLLYESKLYKILQGGTGVPNIRWSGVEGDYNVMVIDILGPSLEDLFNYCNRKFSLKTVLMLADQLINRIEYVHSKSFLHRDIKPDNFLMGLGRRANQCYIIDFGLAKKYRDPATHKHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYMLMYFLRGSLPWQGLKAGTXXXXXXXXXXXXMSTPIEVLCKSYPKEFASFFHYCRSLRFDDKPDYAYLKVLFRELFIREGFQFDFVYDWTILKYQQSQIATADPRSHPALVAGKFGTGAGASERISAGQDGRE
A9NUC1_______________MEPRVGNKYRLGRKIGSGSFGEIYLGTNIQSNExVAIKLENVKTKHPQLVYEAKLYRLLQGGTGIANVRWFGVEGDYNVLVMDLLGPSLEDLFNFCSRKLSLKTVLMLADQMINRIEFVHSRCFLHRDVKPDNFLMGLGRRANQVYVIDFGLAKKYRDPVSHQHIPYRENKNLTGTARYASMNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYEKISEKKVATPIEVLCKTYPSEFASYFHYCRSLRFDDRPDYAYLKRIFRDLFIREGFQFDYVLDWTILKYQQTQMANTPPPSIGAAV-GSSSRAPPVADKSSGGQDGRD

SNPs (tot: 24)

Position	A %	C %	G %	T %	Probability
1624	80		20		0.995493
1626		20		80	0.995493
1628			20	80	0.995493
1632		20	80		0.995493
1665	71	28			1.0
1666			28	71	1.0
1667	71			28	1.0
1668	71	28			1.0
1673	71	28			1.0
1674		28		71	1.0
1679		71	28		1.0
1680		85		14	0.993533
1681	71	14		14	0.984337
1682	85		14		0.993533
1683		14		85	0.993533
1684		14		85	0.993533
1685	14	14		71	0.984337
1686	14	14		71	0.984337
1687	85			14	0.993533
1688		14		85	0.993533
1689	14		85		0.993533
2090		75		25	0.996473
2100			75	25	0.996473
2142		33	66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain