SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene27722

Length: 1152 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene27722

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	CIP111; CIP111 (CAM INTERACTING PROTEIN 111); ATPase/ calmodulin binding	-	-	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	aaa family cdc48 subfamily	-	-	77%

Source	GOs	Term	Type	Identity
Blast2go	hydrolase activity	GO:0016787	Molecular Function	77%
Blast2go	calmodulin binding	GO:0005516	Molecular Function	77%
Blast2go	chloroplast	GO:0009507	Cellular Component	77%

Source	InterPros	Term	Type	e value	Identity
Blast2go	ATPase, AAA-type, core	IPR003959	-	0.0	77%
Blast2go	ATPase, AAA-type, conserved site	IPR003960	-	0.0	77%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ACE6

Fln msg: your sequence is shorter than subject: 173 - 442

Fln protein: DEIDGLAVAREHSSGAISVGDSVMSQLLVEMDGLNPRIGVTVIAATNRPDKIDAALLRPGRFDRLVYVGPPNQAERKEIFDIHTRKMPCGSDLTTLELASVTDGYTGADISSVCREAAMAALEENIDIQEVSMRHFKFALDRVQPSDLSAYENLSAKFQRLTSSGVGDVTIT*

Protein Length: 174

Fln nts: CGATGAGATAGATGGTCTGGCTGTTGCACGGGAGCATAGCAGTGGTGCAATATCTGTAGGAGACAGTGTTATGAGCCAGCTACTTGTAGAAATGGATGGTTTAAATCCAAGGATTGGTGTGACTGTGATTGCTGCGACCAATCGTCCAGATAAGATAGATGCAGCACTGCTGCGTCCCGGACGTTTTGATCGGCTGGTATATGTTGGTCCGCCGAACCAAGCTGAGAGGAAAGAAATCTTTGATATTCACACGCGGAAGATGCCTTGTGGGTCTGATTTAACAACGCTTGAGCTTGCTTCTGTTACCGATGGGTATACTGGAGCTGATATTTCTTCTGTATGCCGTGAAGCAGCTATGGCGGCTCTGGAGGAGAACATTGACATTCAGGAGGTATCTATGCGTCATTTTAAATTTGCACTGGATCGAGTTCAGCCTTCTGATCTCTCAGCTTATGAAAACTTGTCTGCTAAATTCCAAAGACTGACTTCAAGTGGAGTTGGAGATGTGACTATAACTTAA___TTTTGGTTTCTTTGTCTACATGTTTCATTCATTCTAATTTTTCCTCTCTGAAGTAAAGTGTAGAATATTTTGTGTATAGCATTCTGTACTAGCTTGTGCCTTTCTTTTTTCACTTATGAAACAACGAGTAACTGTAGGAATTTACAGGGTAAGTTCCTCAGACAGAACACCATAGGACACTGCTCACAACCAGATCGCAGATCAATATACCGGTATTTTTGACGTGGGTAAAACCCTTAAAGAGGGAAACAATACACGGCCTGAGCCAACGCGGCCACTTCAGGCAATTTATTAATAAAAGAATGAAAATTTACATAAGCTTCTCTCATAGACGGATTACCCTAACAATGACCTTCCATGCGCTTTAAATAGAAATCATGGACCAATCGGGTGTCAAGCCACAGATCAAGTGTCGGTAATACCGAGGAGAGAATGAACCGTCGGATCACTACATATCGTGACCGTCAGATTGTAAGTTACAAAATGTACATAGTAAGGAAACACACTTTACCTAACCCTATACTAGACCAAATTGTACTTAACTATTTCCTATGTGTCGGAATATACTAACAGTAACATGTTAATGACATTACTTAATTTTAGATTATCAGCTAAGCTGTTGTAATTGAGAG

Fln Alignment:

sp_v1.1_unigene27722___DEIDGLAVAREHSSGAISVGDSVMSQLLVEMDGLNPRIGVTVIAATNRPDKIDAALLRPGRFDRLVYVGPPNQAERKEIFDIHTRKMPCGSDLTTLELASVTDGYTGADISSVCREAAMAALEENIDIQEVSMRHFKFALDRVQPSDLSAYENLSAKFQRLTSSGVGDVTIT
D5ACE6_______________DEIDGLAVAREHSSGAISVGDRVMSQLLVEMDGLNPRIGVTVIAATNRPDKIDAALMRPGRFDRLVYVGLPNQADRKEIFDIHMRKMPCGSDLTMLELASLTDGYTGADISSVCREAAMAALEENIGIQEVSMRHFKFALARVQPSDLSSYENLSAKFQRLTSSGVRDVTTT

SNPs (tot: 42)

Position	A %	C %	G %	T %	Probability
340	70		30		1.0
361	30		70		1.0
372	70		30		1.0
427	90		10		0.90298
479	88	11			0.923564
481	77			11	0.968132
487		11		88	0.923564
489		88		11	0.923564
490	88		11		0.923564
491	88		11		0.923564
492		12	87		0.992554
495		14	85		0.993533
497		14	85		0.993533
499	28			71	1.0
502	77	22			0.999999
504	77			22	0.999999
505		22		77	0.999999
511		22		77	0.999999
512	77			22	0.999999
514	71		28		1.0
515	71		28		1.0
522	71	28			1.0
524		37		62	1.0
525	25		12	62	1.0
527		12	87		0.992554
530			14	85	0.993533
531	14			85	0.993533
533		14		85	0.993533
537			14	85	0.993533
540	71			14	0.984337
542	85		14		0.993533
544		14	85		0.993533
545	14			85	0.993533
546		14		85	0.993533
611		85		14	0.993533
655	16	83			0.994512
658			16	83	0.994512
659	83		16		0.994512
1023	85			14	0.993533
1024	85		14		0.993533
1025		85	14		0.993533
1026	85		14		0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain