SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene27720

Length: 1225 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene27720 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ADP-ribosylation factor-like protein n=9 Tax=core eudicotyledons RepID=Q9LFJ7_ARATH	-	-	84%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	arf6 -family small gtpase	-	-	91%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NNN8

Fln msg:

Fln protein: MGQVFRKLFDNIFGNKEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVQFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKAEFQAIINDPFMRNSAILVFANKQDMKSAMTPMEVCEALGLYDLRNRKWHIQGTCATKGEGLYEGLDWLATTLKEMQASGLSTAVGGSRIG*

Protein Length: 197

Fln nts: CGTCGTGACCTTGGCTGTCATCTGGATTGTGGAGAAAATATAGAAGTGGTGGAATTTGATTTTTTCCACCAATTCCTTCGTATTGTCCAAGACGAGCATCAGCAGAGCGATACAGGTGGTGGCACAGGGGCGAT_-_ATGGGGCAGGTGTTCCGCAAGCTGTTCGATAATATCTTCGGCAATAAAGAGATGAGAGTTGTTATGCTTGGCTTGGATGCAGCTGGTAAGACAACTATATTATACAAGCTACATATTGGAGAAGTTTTATCTACTGTGCCAACTATTGGTTTTAATGTTGAAAAAGTTCAATACAAGAATGTCCAGTTCACAGTATGGGATGTGGGTGGACAGGAGAAGCTTAGGCCTCTTTGGAGGCATTACTTCAACAACACTGATGGCCTGATATATGTTGTTGATTCATTAGACAGGGAGAGGATTGGGAAGGCCAAAGCAGAATTTCAGGCCATCATCAATGACCCCTTCATGAGGAACAGTGCTATCTTAGTATTTGCAAACAAACAAGATATGAAAAGTGCAATGACTCCAATGGAAGTATGTGAGGCTCTTGGGCTTTATGATCTACGAAATAGGAAGTGGCACATTCAAGGTACTTGTGCTACAAAAGGAGAAGGCTTATATGAAGGACTGGACTGGTTGGCTACGACTCTGAAAGAAATGCAAGCTAGCGGACTATCTACAGCAGTTGGTGGTTCAAGAATCGGATAA___ACATGGTATCCATTTTATTTGTCATGCGTCTATAACTTGGATATTTGTATCCTACATATTTATGTGAACGAGCATCATGCGGTCTCACACATGCTGATTGGAAAAGCCATATGCGTCATGTACCCTTCGCCATTGCCGAGTTTCTCTCTAGCTGCACAATTATTCAATTGTATGCCCAACTTGCCCTTGTCCAAATACTTTGTTGTATATTTTAGCTATGTATAAACTAGCCCTTGCATAAGCCAAGGTCAAGTTGCACAAATACTTTCAGATTACTATATGACAGATTTCTAGTCCCTATGGGCTATTGTTCACTCGCTGTGCGAGAATATGGAGGTTTCATTTGAGTTAGGCGCAACGATCTGAATTTTAATTTTTATTTTTCCGGTGTAAAAAATATTATTGCTTGGTTTACTTTTTCTTATTCAAAGTTTGTGACACCAGAACATGTATATAGTCAAATCTTTAATTTTGCGTAGTCACCGGGGAATTCACCGGTCAGG

Fln Alignment:

sp_v1.1_unigene27720___MGQVFRKLFDNIFGNKEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVQFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKAEFQAIINDPFMRNSAILVFANKQDMKSAMTPMEVCEALGLYDLRNRKWHIQGTCATKGEGLYEGLDWLATTLKEMQASGLSTAVGGSRIG
A9NNN8_______________MGQTFRKLFDNIFGNKEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVQFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKAEFQAIINDPFMRNSAILVFSNKQDMKGAMTPMEVCEALGLYDLRNRRWHIQGTCATKGEGLYEGLDWLATTLKEMQASGLSTAVGGSRIG

SNPs (tot: 55)

Position	A %	C %	G %	T %	Probability
520		97		2	0.971188
567		92	7		1.0
568	7		92		1.0
569		7		92	1.0
578	92		7		1.0
582	7	92			1.0
583	90	7			1.0
585	7	1		90	1.0
587		90	9		1.0
589		3		96	0.989722
601			4	95	0.994598
608	4			95	0.996599
714		12	87		0.999964
715		12		87	0.999964
716	12			87	0.999964
767	10	90			0.90298
768		90	10		0.90298
772	90	10			0.90298
774			10	90	0.90298
775		10		90	0.90298
777	10			90	0.90298
779		90	10		0.90298
781		10		90	0.90298
782	10			90	0.90298
783		10	90		0.90298
785	10	90			0.90298
787			10	90	0.90298
802	14	85			0.993533
907			20	80	0.995493
1130	10	90			0.90298
1131		10		90	0.90298
1132	10	90			0.90298
1134		10		90	0.90298
1136	10			90	0.90298
1137	10			90	0.90298
1140	90			10	0.90298
1143	90	10			0.90298
1144			10	90	0.90298
1179	87	12			0.992554
1180		87	12		0.992554
1181		25		75	1.0
1182		25	12	62	1.0
1183	25	75			1.0
1184		25		75	1.0
1186			14	85	0.993533
1187	83	16			0.994512
1188		16		83	0.994512
1189	16			83	0.994512
1190	16			83	0.994512
1191			16	83	0.994512
1192		83	16		0.994512
1201		33	33	33	0.997753
1203		33	33	33	0.997753
1204	33	33		33	0.997753
1205		33	66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain