SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene27716

Length: 1151 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene27716

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	GDP-mannose pyrophosphorylase n=4 Tax=Pinaceae RepID=A6N835_PINTA	-	-	89%
FL-Next	tr=GDP-mannose pyrophosphorylase; Pinus taeda (Loblolly pine).	-	-	99%
Blast2go	gdp-mannose pyrophosphorylase	-	-	94%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A6N836

Fln msg: your sequence is shorter than subject: 234 - 361

Fln protein: GGEASIMVTKVDEPSKYGVVILDEETGRVDRFVEKPKIFVGNKINAGIYLLNPSVLNMIELRPTSIEKEVFPKIATEKQLYAMILPGFWMDIGQPKDYISGLRLYLDSLRRNLPKKLSFGAHIIGNVIVDETAQIGEGCLIGPDVAIGPGCVIEAGVRLSRCTVMRGVRIKKHACVSGSIIGWHCTVGQWARVENMTVLGEDVHVCDEVYSNGGVVLPHKEIKSSITKPEIVM*

Protein Length: 235

Fln nts: ATGGGGGAGAGGCCTCAATTATGGTCACGAAGGTGGATGAGCCATCAAAGTATGGCGTGGTTATTCTTGATGAAGAAACTGGTCGAGTAGACAGATTTGTGGAGAAGCCTAAGATCTTTGTTGGAAACAAGATCAATGCAGGGATTTATCTTCTGAATCCCAGTGTTCTGAATATGATTGAGCTGAGACCCACTTCAATTGAAAAAGAGGTGTTCCCAAAAATAGCCACTGAGAAGCAGCTCTATGCCATGATATTGCCCGGATTCTGGATGGATATAGGGCAACCAAAGGATTATATTTCAGGACTAAGGCTTTACTTAGATTCCCTGAGAAGAAATTTACCCAAGAAATTGTCATTTGGTGCTCACATCATTGGAAATGTGATAGTAGATGAGACTGCTCAGATTGGGGAAGGGTGCTTAATTGGGCCAGATGTTGCAATCGGTCCTGGGTGCGTGATTGAGGCAGGGGTGAGGTTGTCTCGCTGCACGGTTATGAGGGGAGTTAGGATTAAAAAGCATGCTTGTGTCTCTGGGAGCATCATTGGTTGGCATTGTACTGTTGGGCAGTGGGCCAGAGTGGAAAACATGACCGTGTTAGGGGAGGATGTGCATGTTTGTGATGAGGTATATAGCAATGGGGGTGTGGTGCTTCCCCACAAGGAAATCAAATCCAGCATCACCAAGCCAGAAATTGTCATGTGA___CTGTTCAAAGAAATCAGCAAGGAATGCTTGCTTGCTTGCTTGGCTGATTACTTTAGTGTTGCCATTTTTATGTGAAGAGGTTGCAGTGGAGAAGATTGTTTTTCTCTTTCATGTTTATCTCGAGAATTGTAGGATATACCACAGGCTACAAATCTCTGGTTTTGGATTTATGATTTGGTAATCAATGCCATGTAAATAATTTGTTGCTGCCTGTAAGAGATAGCTCTGGCAATCCTATTAGTGAATGAAATTATTTTTATTTTGCCAAATGAAATTTTCTCCATTAGTAGAAAAGTTTTCAATTGTTACCTTTATCTGGATAATGCCTGAATTTGAAATCAAGGAGAAATATACCTGGGAAATATAGCTAGGAAATTTAGTATTTATCTGGATAATGGCTGAATTTAAACTCAAAGAGCAATCTACATGGGAAATATAGCTCGGAAA

Fln Alignment:

sp_v1.1_unigene27716___GGEASIMVTKVDEPSKYGVVILDEETGRVDRFVEKPKIFVGNKINAGIYLLNPSVLNMIELRPTSIEKEVFPKIATEKQLYAMILPGFWMDIGQPKDYISGLRLYLDSLRRNLPKKLSFGAHIIGNVIVDETAQIGEGCLIGPDVAIGPGCVIEAGVRLSRCTVMRGVRIKKHACVSGSIIGWHCTVGQWARVENMTVLGEDVHVCDEVYSNGGVVLPHKEIKSSITKPEIVM
A6N836_______________GGEASIMVTKVDEPSKYGVVILDEETGRVDRFVEKPKIFVGNKINAGIYLLNPSVLNMIELRPTSIEKEVFPKIATKKQLYSMILPGFWMDIGQPKDYISGLRLYLDSLRRNLPKKLSFGAHIIGNVIVDETAQIGEGCLIGPDVAIGPGCVIEAGVRLSRCTVMRGVRIKKHACVSGSIIGWHCTVGQWARVENMTVLGEDVHVCDEVYSNGGVVLPHKEIKSSITKPEIVM

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
647			92	8	0.999718
728	92	1			0.999976
768	10			15	1.0
769	89			10	1.0
971		40		60	1.0
976	25			75	0.996473
977	25		75		0.996473

SSRs (tot: 1)

Start position	End position	Sequence	Length
729	746	TGCT TGCT TGCT TGCT TG	18

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain