SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene27712

Length: 1393 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene27712

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	MUB6; MUB6 (MEMBRANE-ANCHORED UBIQUITIN-FOLD PROTEIN 6 PRECURSOR)	-	-	8.0e-34	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	97%
Blast2go	protein	-	-	0.0	80%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Membrane-anchored ubiquitin-fold protein, HCG-1	IPR017000	-	0.0	80%
Blast2go	Ubiquitin supergroup	IPR019955	-	0.0	80%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A8B1

Fln msg:

Fln protein: MAGGELLELKFRLNDGTDIGPHKYAPAATIATLKESILAKWPQGKENAPKTINDMKLINAGRILENNKTLADSRVPVGEVPGGVITMLVVVHPQLLNKKEEKQLTDLPKKDRCSCTIM*

Protein Length: 120

Fln nts: CGTGAACAGTATGTAGACCGGGGCCAACGTTCAATTCAGAATAAATCTTTGGCTCTTTTACACGTCAGAACACAAACGGCATTTTTCCAAAAAATATCCGCAAGGCTCTGCAATGGAAGGATTCGATCTCTAGACCTCCATCCCTGCACTTCATCCTCTGTTCCAGCCCTCGATTTTGGTTATTACCAAACAACCCGCTGATCCTACGGATTTCAGAGATTTTTGCAGTTAATTTCCACAGTGCAATAAATGCAAGTCAGAAATTCGGACTTCAACATACTGAGATGTTATCTTCCATACCAGAACTTTACAGAGGGTTTTAAAATGCTGTGAAGGTGCTCCTCAGGACTTGGAATTTGGGTCTGTTTCTTGAAAAGTTTTTATTGAATAAGCAGATGTTTAAGATAAGTTATTACTCTTGCGAAGTATTTTGGTAAGATAAAAGCTTCTACGTTGTTTACTGCTTTTACTCCTGCAAGGCTTTGAAATCTTAAGCGAGGATTATAGAATGCACTTGTGATAAATGGATTAAGAATTGGAAGGCATGTTGTGCCTGGATCCACATATATACTAGCAAGAATTGCA_-_ATGGCAGGAGGGGAATTGCTGGAACTGAAGTTTCGACTCAATGATGGTACGGACATTGGTCCTCACAAATATGCACCGGCTGCTACAATTGCCACTCTCAAGGAAAGCATACTTGCAAAGTGGCCACAAGGCAAAGAAAATGCTCCTAAAACAATAAATGACATGAAACTCATTAATGCGGGGAGAATCCTGGAGAACAATAAGACACTTGCAGACTCAAGAGTCCCTGTTGGTGAGGTCCCAGGTGGGGTCATTACAATGCTTGTTGTTGTACACCCTCAACTATTAAACAAAAAAGAAGAGAAGCAACTGACAGATCTTCCCAAGAAGGATAGATGTTCTTGCACAATCATGTAG___TCGGATGAAACTTGTAGATTTTGAAGAATGCTCCTTTGACATATGGAGTTGTGCTTTCTGTTCATCCGTAACAATATTTTTATAAATTTCAGTGTATGTCAGAGCTGTGAATTCACTTGGTGTTCCATATCATGGTATATAACTTCGATTTTTCCGACTTGGATTTATTAGAATATTAGAAGATATATTGGAAAGTTCCACATATATTCATTGATTTAAAAGATGAGATAACTATCAGTTGAAATAGAATCTCTTTTTTGAAGTAGGGGTATATTCTACAGCTGGAGCAAGCAATAATTCTATGACTAGTGTTATTGTTCTTTGCTTGCACTGGCGGCAGCTGAGTTCTATGCATTTCAGTTATATGCCATTTCATAAACGTCGTTAATTTTGAGGGGAAGCATTGCAAGCTTTATATTCTAGATTTTATCAGTAAACATTGTAATAAAAT

Fln Alignment:

sp_v1.1_unigene27712___MAGGELLELKFRLNDGTDIGPHKYAPAATIATLKESILAKWPQGKENAPKTINDMKLINAGRILENNKTLADSRVPVGEVPGGVITMLVVVHPQLLNKKEEKQLTDLPKKDRCSCTIM
D5A8B1_______________MAGGELLELKFRLYDGTDIGPHKYAPAATIATLKESILAKWPQGKANAPKTINDMKLINAGRILENNKTLADSRVPVGEVPGGVITMLVVVHPQLLNRKEEKQLTDLPKKDRCSCTIM

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
177	16			83	0.994512
182			16	83	0.994512
212			16	83	0.994512
220	12		87		0.992554
410	72	27			1.0
957		9		90	0.999872
963		9		90	0.999872
966			9	90	0.999872
968	90	9			0.999872
969	90			9	0.999872
972	90	9			0.999872
1008	87	3	9		1.0
1010		87		3	1.0
1014	87		12		1.0
1017	90	6			0.996531
1018	87	6		6	0.990219
1020	87	3	6		0.990219
1021	3	6		90	0.997073
1023			9	90	1.0
1025		6		93	0.999153
1324		50		50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain