SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene27691

Length: 1245 nt

Origin of reads: Biogeco_1 Uagpf

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene27691

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	3-5 exonuclease, putative	-	-	4.0e-34	41%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	75%
Blast2go	3-5 exonuclease nucleic acid binding protein	-	-	0.0	61%

Source	InterPros	Term	Type	e value	Identity
Blast2go	3'-5' exonuclease domain	IPR002562	-	0.0	61%
Blast2go	Ribonuclease H-like domain	IPR012337	-	0.0	61%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9P1U4

Fln msg: your sequence is longer than subject: 278 - 204

Fln protein: MAEAGITRDGRARRRRKRTPAQQGWNGQDFIDSRLHVNPAKRPQIDRWAEAGFISRGQTEQHNIAHRAGAGTGPSPFRRNSFGQRNTSCIEIDFEGKSIQTTVTDDGRVAENWVNQQKGQEIVGLDLEWKPNFQKGSDNKTALLQLCTDNGCLIIQMLFLDFIPEALVRFLKDPGVKLVGVGIDQDVTKLRKDYGLECGGQLELGTLAVERLERQELKQGGLKGLAMEILGLSLLKPKNISTSNWACRTLREGQIRYACIDAYVSFAIGKKLLEPEN*

Protein Length: 279

Fln nts: CGTGAGCACAGGAACCGGATCCCTGGGCGTTCCGAAGATTACAACAGAACAGCTCAATACGGTCTGCCCGATAGGCTGAGCATTCGAGTTATACTCAA_-_ATGGCCGAAGCAGGAATCACCAGAGACGGAAGAGCCCGAAGAAGAAGGAAGAGAACACCTGCCCAACAAGGTTGGAACGGCCAAGATTTCATTGACTCGCGTTTACATGTCAATCCAGCTAAGCGACCCCAGATCGATCGTTGGGCGGAGGCCGGTTTCATCTCCAGAGGCCAAACGGAACAGCATAATATCGCCCACAGAGCCGGAGCGGGCACTGGTCCTTCACCCTTTAGAAGAAACTCCTTTGGACAGAGGAATACCAGCTGCATCGAGATTGACTTTGAGGGAAAATCCATACAAACGACCGTTACGGACGACGGTCGTGTTGCAGAGAATTGGGTTAATCAGCAAAAAGGGCAGGAAATAGTAGGGCTTGATCTGGAATGGAAGCCCAATTTTCAAAAAGGTTCGGACAACAAGACTGCATTGCTTCAGCTCTGCACTGACAATGGCTGCCTGATTATTCAGATGTTGTTTTTGGATTTTATTCCAGAAGCCCTGGTTAGGTTTTTAAAAGATCCGGGAGTTAAATTGGTTGGGGTGGGTATTGATCAAGATGTGACTAAACTTAGGAAAGATTATGGTCTGGAATGTGGAGGTCAGCTCGAGCTGGGTACCTTGGCAGTCGAAAGGCTCGAAAGACAGGAGCTTAAGCAAGGCGGGCTCAAGGGTTTGGCTATGGAGATTCTGGGCTTAAGCCTTTTAAAGCCAAAAAATATTTCTACAAGCAATTGGGCGTGTCGGACGCTTCGGGAGGGGCAGATAAGGTATGCTTGCATCGATGCCTACGTTTCTTTTGCGATCGGTAAGAAACTCTTGGAGCCCGAAAACTGA___GATTGTCTTTTAGGGTGTATTCAGAAAGGGACCAGAGTTGTTGCCTATAGTTTTTTCCTCCGATTAAGTGGCCCTGGGCAAGGAAATACATGAATTGGGTTTGTAATTTCAAGGGCTTCGCGTTTTTGGTGTATGCCTTTTTATTTATGTAAGTCTGATTCAGTGGGATGTAGTAATGTATTACATCTGTGAATCCGTCATGGAAAACTGTGCAAGAACAAATTTGTTGCAATGCTTGATTGATGAATTGGTGAATTTCACCAGATCAAGTGGTCTGTCAGCCCTGTTTCAGATTGATTACAGAGTACTTGAA

Fln Alignment:

sp_v1.1_unigene27691___NTSCIEIDFEGKSIQTTVTDDGRVAENWVNQQKGQEIVGLDLEWKPNFQKGSDNKTALLQLCTDNGCLIIQMLFLDFIPEALVRFLKDPGVKLVGVGIDQDVTKLRKDYGLECGGQLELGTLAVERLERQELKQGGLKGLAMEILGLSLLKPKNISTSNWACRTLREGQIRYACIDAYVSFAIGKKLLEPEN
A9P1U4_______________NTTCTEVHFAEKSIQTTVTDDGHVVENWVNQQTGQEIVGFDMEWRPSFQRGWENDTALLQLCTDNGCLIIQMLFLDFIPEALVSFLKDPGVKLVGVGIERDAAKLMNDHGLECGGQVELGALAAEKLERRELKQAGLKGLAKEVLGLRLSKPKSISMSNWAWAILQHRQIQYACIDAFVSLAIGKKLMESEN

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
471		75		25	0.996473
544	75		25		0.996473
545		75	25		0.996473
638	66		33		1.0
722	57			42	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain