SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene27635

Length: 1820 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene27635

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Ubiquitin carboxyl-terminal hydrolase (Fragment) n=1 Tax=Vitis vinifera RepID=D7SU81_VITVI	-	-	48%
FL-Next	sp=Ubiquitin carboxyl-terminal hydrolase 26; Oryza sativa subsp. japonica (Rice).	-	-	50%
Blast2go	ubiquitin specific	-	-	69%

Source	GOs	Term	Type	e value	Identity
Blast2go	seed development	GO:0048316	Biological Process	0.0	69%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Ubiquitin	IPR000626	-	0.0	69%
Blast2go	Peptidase C19, ubiquitin-specific peptidase, DUSP domain	IPR006615	-	0.0	69%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: A3AF13

Fln msg: your sequence is shorter than subject: 455 - 1079

Fln protein: KDAVEAVLAGRYLEGSQYYVSRTWLMRWLRRKIVDAPCDGDAGPTASLKCPHGGLLPEQATGAKRQLLPENIWNYFHENALQIEPNNPVGYTPFPSDSETCEACEMELTQAANLQDHLRATKMEQRQRHELLSSGKSIAVVPEVRYYLVPSFWIAKWKAYLTVSGRNASTTEEPQNLEHCMESILCRKHFRLLYRPPDLVRKRGEFVQKTTNVDVLTIITQMDWELFCEEWNVPKNKGISAVIELKSAEISDISGNCKEVPITDEDLNGDDSECKIHRIPTLRTQPEICEECIEERESSELMRKLEYSNEEIRVYLVRGKEPPRSILAASGTVSDAERRTSKRSRKASTSGSLINLKVSGCTSIYQLKMMIWESFGVVKENQKLHKGTTELTEESATLADLNVFPGDSLWVTDTEMFENRDIAEELSEQEMDNGQTEEGFKGTLLMSTIPAKVF*

Protein Length: 456

Fln nts: GAAAGATGCAGTGGAAGCTGTGCTTGCAGGACGTTATTTAGAAGGGAGTCAGTATTATGTTTCTAGAACATGGTTGATGCGATGGTTGCGGCGAAAAATTGTGGATGCACCTTGTGATGGTGATGCTGGTCCAACAGCTTCTCTTAAATGTCCTCATGGAGGCCTTCTGCCAGAACAGGCAACTGGTGCCAAGCGGCAGTTGTTGCCTGAGAATATCTGGAATTATTTTCATGAAAATGCATTGCAAATTGAACCTAATAATCCTGTAGGCTATACCCCCTTTCCATCGGATTCAGAGACTTGTGAAGCTTGTGAGATGGAATTAACACAGGCAGCCAATTTACAAGACCATCTGAGGGCAACCAAGATGGAACAACGGCAAAGACATGAACTGTTATCTTCCGGTAAAAGCATTGCTGTGGTACCCGAAGTTAGATATTATTTGGTGCCTTCATTCTGGATTGCAAAATGGAAAGCTTACTTGACAGTAAGTGGCAGGAATGCTTCTACAACAGAAGAGCCACAAAATTTGGAGCATTGTATGGAATCTATTTTGTGCAGAAAGCATTTTCGATTGCTTTATAGGCCTCCTGATCTTGTCAGAAAGCGAGGTGAATTTGTGCAGAAGACTACAAATGTCGACGTTTTGACAATTATTACACAGATGGACTGGGAGCTTTTCTGCGAAGAATGGAATGTGCCTAAAAATAAAGGCATTAGTGCTGTGATTGAATTGAAATCTGCTGAAATCAGTGATATTTCTGGAAACTGCAAGGAGGTGCCAATCACTGATGAGGACTTAAATGGTGATGATTCAGAGTGTAAGATCCACAGAATCCCTACCCTGAGAACGCAGCCAGAGATTTGTGAAGAATGTATAGAGGAAAGAGAAAGCTCTGAATTGATGCGTAAATTGGAATATAGTAATGAGGAAATTCGCGTTTATCTTGTCCGAGGGAAAGAGCCTCCTAGGTCTATTCTGGCTGCGTCTGGCACGGTGTCTGATGCTGAGCGACGTACTTCAAAACGCTCTCGAAAGGCATCAACAAGTGGTAGCTTAATTAACTTGAAGGTTTCTGGATGCACATCTATCTATCAGTTGAAGATGATGATTTGGGAGTCCTTTGGAGTGGTGAAGGAGAATCAGAAGCTTCACAAAGGCACAACGGAACTAACGGAAGAATCAGCTACTTTAGCTGACTTGAATGTGTTCCCTGGTGATAGTTTATGGGTCACAGACACTGAAATGTTTGAAAATCGAGACATCGCTGAGGAACTATCGGAGCAAGAAATGGACAATGGGCAAACAGAAGAAGGATTCAAAGGCACACTTCTGATGTCAACCATACCTGCTAAGGTGTTTTAA___GAGCTTTAACTATTTGTTGCTATTATAAAGATTAAGGTTGTCACCTGGATTTGTTGACATATAATTTTTGGGGCAATCGGTTTCTACTGTTGTTACCTTGAAAGAGATGGATATGGTGCAGTCTAGCGGACTAGCACATTTTGCTTCTTATACAGCTGAAAAATTCGTGCTAGTATCTTTTCTCTTTATAATGCATTGAGGAAATTGATGCAATTGATTCTATAAGCCAGGGCTGTTCAGGATATAGCAGCATCGGGAACCTGTCACTGGTGTAATGGTGGTGATGAGTTTATTGTAACTTTATTTTATGTAATCTTGGGCCATATGATTCGTTGGATATATTTTCTTTTGTGTAGGGGTTTTCAGTGTGATTGCAACATATATCAACTGTGACCATTGGCAACACAACACACTTCTCTCCAGTGAAATTATCAAATGTGATTGATTATTCATT

Fln Alignment:

sp_v1.1_unigene27635___KDAVEAVLAGRYLEGSQYYVSRTWLMRWLRRKIVDAPCDGDAGPTASLKCPHGGLLPEQATGAKRQLLPENIWNYFHENA-LQIEPNNPVGYTPFPSDSETCEACEMELTQAANLQDHLRATKMEQRQRHELLSSGKSIAVVPEVRYYLVPSFWIAKWKAYLTVSGRNASTTEEPQNLEHCMESILCRKHFRLLYRPPDLVRKRGEFVQKTTNVDVLTIITQMDWELFCEEWNVPKNKGISAVIELKSAEISDISGNCKEVPITDEDLN---GDDSECKIHRIPTLRTQPXXXXXXXXXXXXXXLMRKLEYSNEEIRVYLVRGKEPPRSILAASGTVSDAEXXXXXXXXXXXXXGSLINLKVSGCTSIYQLKMMIWESFGVVKENQKLHKGXXXXXXXXXXXXDLNVFPGDSLWVTDTEMFENRDIAEELSEQEMDNGQTEEGFKGTLLMSTIPAKV
A3AF13_______________RSIAEAALAGNNPDGPLYFVSRPWLTQWLRRKNVDIPSDADSGPTIALTCTHGNLLPEHASGAKRVTVPEDLWLFLYETSGMKIDD-----IVTFPSDSQPCGICSQQLSVVASVEDNLRAVKLKQRQSHEKLTSGKSLALHPGQKYYLVPSSWLSEWRAYITATGKNISSLPEPQSLEVTINSLICEKHSRLLQRPLDLVCKRGTITQKASNTDGLTMISESDWILFSEEWNVAHGKGLCAEIVFSKSSQDNLQSS-EAVPILVEDLDQSTNDLSNDLGGREPYVRTDPEVCEECIGEKESCALVEKLNYQNEDIQVYLVRGKEAPKSIREASAAV-PVPDRRTSKRSRRTTSGNSISLKVSGSTTVYQLKLMIWESLGIVKENQELHKGSVEIEDDFATLADKCIFPGDVLWVKDSEIYENRDIADEISEQKV-VVQTEEGFRGTLLTSSASAQL

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
1234		20	80		1.0
1239		80	20		1.0
1240	80			20	1.0
1247			80	20	1.0
1248	80		20		1.0
1249	80		20		1.0
1250	80	20			1.0
1254		21		78	1.0
1256		23	76		1.0
1435		10		90	0.90298
1436			10	90	0.90298
1438		10		90	0.90298
1440			90	10	0.90298
1442	10		90		0.90298
1444	90	10			0.90298
1445	90			10	0.90298
1447		90	10		0.90298
1449		10	90		0.90298
1451			10	90	0.90298
1583	11			88	0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain