SustainPineDB

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Assembly info
Unigenes
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SSRs
Descriptions
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ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene27621

Length: 533 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene27621
GGCAGGAGCATTTGATTTTGTATGGGCAGTCTGTTGGGAGCGGACCCACGTTACACTTGGCAGCCCGCTTACCAAGGTTGAGGGGTGTTATTCTTCACAGTGCTATACTATCAGGACTACGCGTGCTCATCCGAGTGAAACTTACATTCTGGTTTGATATCTACAAAAATGTTAGCAAGATTCAACATGTGAAATGCCCAGTACTTGTTATACATGGAACAGAGGATGATATAGTCAACATGTCACATGGAAAGGCTCTATACAAGCTATCTACAGAACCATATGAACCTTTGTGGGTCAATGGAGGTGGTCACTGCAACCTTGAACTTTACCCCGAGTACTTCCAGCATTTGAGGAAATTTATCCAAGAACTGGAAAACTCAGAGAAAATTAAATTGAATCAGATTCAGAATAGTCTTCAACGACCACCGTGTAACAAGTTCTTTAGTGTCTTGTGTATGGCTGATCTGTGCCAACGCTAAAACTGGATGGGATTCTTCTTTTTTAAGGGATAACCAAATGCGTTAGGATTC

Ace file of the UniGene sp_v1.1_unigene27621

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Protein bem46, putative n=1 Tax=Ricinus communis RepID=B9RZ23_RICCO	-	-	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	63%
Blast2go	protein	-	-	84%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	84%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Phospholipase/carboxylesterase/thioesterase	IPR003140	-	0.0	84%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NV43

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 71 aas, your sequence is shorter than subject: 160 - 384

Fln protein: QEHLILYGQSVGSGPTLHLAARLPRLRGVILHSAILSGLRVLIRVKLTFWFDIYKNVSKIQHVKCPVLVIHGTEDDIVNMSHGKALYKLSTEPYEPLWVNGGGHCNLELYPEYFQHLRKFIQELENSEKIKLNQIQNSLQRPPCNKFFSVLCMADLCQR*

Protein Length: 161

Fln nts: GGCAGGAGCATTTGATTTTGTATGGGCAGTCTGTTGGGAGCGGACCCACGTTACACTTGGCAGCCCGCTTACCAAGGTTGAGGGGTGTTATTCTTCACAGTGCTATACTATCAGGACTACGCGTGCTCATCCGAGTGAAACTTACATTCTGGTTTGATATCTACAAAAATGTTAGCAAGATTCAACATGTGAAATGCCCAGTACTTGTTATACATGGAACAGAGGATGATATAGTCAACATGTCACATGGAAAGGCTCTATACAAGCTATCTACAGAACCATATGAACCTTTGTGGGTCAATGGAGGTGGTCACTGCAACCTTGAACTTTACCCCGAGTACTTCCAGCATTTGAGGAAATTTATCCAAGAACTGGAAAACTCAGAGAAAATTAAATTGAATCAGATTCAGAATAGTCTTCAACGACCACCGTGTAACAAGTTCTTTAGTGTCTTGTGTATGGCTGATCTGTGCCAACGCTAAAACTGGATGGGATTCTTCTTTTTTAAGGGATAACCAAATGCGTTAGGATTC

Fln Alignment:

sp_v1.1_unigene27621___QEHLILYGQSVGSGPTLHLAARLPRLRGVILHSAILSGLRVLIRVKLTFWFDIYKNVSKIQHVKCPVLVIHGTEDDIVNMSHGKALYKLSTEPYEPLWVNGGGHCNLELYPEYFQHLRKFIQELENSEKIKLNQIQNSLQR
A9NV43_______________EEDIILYGQSVGSGPTLDLAARLPSLRAVVLHSAILSGLRVMYPVKRTYWFDIYKNIDKMPLVNCPVLIIHGTSDEVVDCSHGKQLWDLCKEKYEPLWLKGGSHCNLELYPDYIRHLRKFISTVEKSPVLR-NSSRRSTDR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain