SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene27594

Length: 482 nt

Origin of reads: Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene27594
CACATCAGAGGTATTATCTGATGAAGTTGAATACCCCAACCTTCGAGGGTTAATCTTAGAGGAATGTATTAATGTGGTGAAGGTTGGAACATTACCAAAGGAACTCAGATATGTCAGATTGGATAGGTGCTACAATCTGAGAAGTATACAAGGCCTTTGTGGTCTTCCAATGCTTCAATACCTACACATTGTAAAGTGTAACGAACTTCAGGAGCTGCCGAGTGTTAAAACATTGGTGTTCTTGGATGTAGTAGATTGTGAGAAGTTGAATAGCATACGGGATTTGGCGCACCAAACAGAGCTTTGTTGGCTACATGTTCGGGGGTGCCCTGAGTTGGAGAAGCTGGAGGGAGTTGAATATTGTACATCGTTATGTGATTTTTCTGTCGAGGGGTGTCATAAATTGCGGTTGGGTGAGAGAGTAGTAGAGGGGCTGCGCCAGAAATGTAAGTACTTTGACTTGGAGTAACCAAATCGAAATC

Ace file of the UniGene sp_v1.1_unigene27594 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	TIR/P-loop/LRR n=1 Tax=Pinus taeda RepID=Q8L8J0_PINTA	-	-	3.0e-13	36%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	60%
Blast2go	tir-nbs-lrr protein	-	-	1.33751e-34	59%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AB91

Fln msg: your sequence is shorter than subject: 156 - 482

Fln protein: TSEVLSDEVEYPNLRGLILEECINVVKVGTLPKELRYVRLDRCYNLRSIQGLCGLPMLQYLHIVKCNELQELPSVKTLVFLDVVDCEKLNSIRDLAHQTELCWLHVRGCPELEKLEGVEYCTSLCDFSVEGCHKLRLGERVVEGLRQKCKYFDLE*

Protein Length: 157

Fln nts: CACATCAGAGGTATTATCTGATGAAGTTGAATACCCCAACCTTCGAGGGTTAATCTTAGAGGAATGTATTAATGTGGTGAAGGTTGGAACATTACCAAAGGAACTCAGATATGTCAGATTGGATAGGTGCTACAATCTGAGAAGTATACAAGGCCTTTGTGGTCTTCCAATGCTTCAATACCTACACATTGTAAAGTGTAACGAACTTCAGGAGCTGCCGAGTGTTAAAACATTGGTGTTCTTGGATGTAGTAGATTGTGAGAAGTTGAATAGCATACGGGATTTGGCGCACCAAACAGAGCTTTGTTGGCTACATGTTCGGGGGTGCCCTGAGTTGGAGAAGCTGGAGGGAGTTGAATATTGTACATCGTTATGTGATTTTTCTGTCGAGGGGTGTCATAAATTGCGGTTGGGTGAGAGAGTAGTAGAGGGGCTGCGCCAGAAATGTAAGTACTTTGACTTGGAGTAA___CCAAATCGAAATC

Fln Alignment:

sp_v1.1_unigene27594___SEVLSDEVEYPNLRGLILEECINVVKVGTLPKELRYVRLDRCYNLRSIQGLCGLPMLQYLHIVKCNELQELPSVKTLVFLD---VVDCEKLNSIRDLAHQTELCWLHVRGCPELEKLEGVEYCTSLCDFSVEGCHKLR
D5AB91_______________SEVSFDEGVCPNLRKFILRECINLVEVGTLPNTLTYVKVSSCYNLRSIEGLSGLAMLQSLVIRKCNELHELLSVKTLVALESLYAIDCVKLKSIRELAQLTKPSHLDVSGCLELEKLEGVEYCRSLFQVVARRCPKLQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain