SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene27583

Length: 1605 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene27583

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	LysM domain GPI-anchored protein 1, putative n=1 Tax=Ricinus communis RepID=B9RJ77_RICCO	-	-	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	82%
Blast2go	peptidoglycan-binding domain-containing protein	-	-	70%

Source	GOs	Term	Type	e value	Identity
Blast2go	anchored to plasma membrane	GO:0046658	Cellular Component	0.0	70%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ADU4

Fln msg: your sequence is longer than subject: 418 - 141

Fln protein: MGMISRSTLWLSVAVMIFFKPVQVLSKSTIEPCDGSDTCNSMAGYILPTELKISEVSTLFQVDPVSLLGANGIDLSYPDIENQILPAHYFIRVPITCGCVDGIRKSMSVVYKVKAADTLPSIANNVFGGLVTSDQLKDANSITDPDVIDIGQSLTVPLPCSCFNGTDNGLPAIYLSYVVRPGDTMAALGAKYGTTVTDLMTVNAMGTPVISPGDILSIPLAACSSSISKYSSDSHLLVANGSYTITASHCVQCSCGPGNLNLYCAPAPLAASCSSMQCKKSILMIGNTTTQPTSGGCNVTTCSYSGFLNGTILTSLFTSLQPQCPGLQVMPNFTGPPSTTTSIGVAPSPSPSPGVLRLPKSPSSIISSPIITGFAPANGPTGSSSSAPESLRWVSIASFLLLGLPFVIHFGDFQLFH*

Protein Length: 419

Fln nts: TTCATTCATTATACAGAAAGGGGCTGCGCACATTACTACTGTTGCTGTTACTACAGCAAGCCTGTTATTGTCCCCAAAACACCCATCTACTTCTCAGAAGGTAGAA_-_ATGGGGATGATCAGCAGATCAACACTATGGCTTTCGGTCGCAGTCATGATTTTCTTCAAACCTGTTCAAGTTCTTTCCAAGTCTACCATAGAGCCCTGTGATGGTTCAGACACCTGCAACTCAATGGCGGGCTACATACTTCCTACAGAGCTAAAGATATCAGAAGTCTCGACACTTTTCCAAGTAGACCCAGTTTCACTTCTAGGAGCTAATGGCATTGATTTATCATACCCTGACATTGAAAACCAGATTCTGCCTGCACACTATTTCATCAGAGTGCCTATAACCTGCGGCTGTGTGGACGGTATCAGGAAATCAATGTCAGTGGTATACAAGGTTAAGGCAGCAGATACACTGCCCAGCATTGCTAATAACGTGTTTGGGGGTCTTGTGACTTCGGACCAATTGAAGGATGCAAACAGCATAACGGATCCTGACGTTATAGACATTGGACAGTCACTCACCGTTCCTCTGCCTTGCAGTTGCTTCAATGGGACTGATAATGGGCTTCCGGCTATTTACTTGTCATATGTTGTGCGGCCTGGGGATACAATGGCTGCCCTTGGGGCCAAGTACGGGACTACTGTCACAGATCTGATGACTGTCAATGCAATGGGGACTCCTGTTATCAGCCCCGGAGACATCCTTTCAATACCTCTAGCTGCTTGTTCATCAAGCATATCAAAATATTCCTCAGATTCTCACTTGCTTGTCGCCAATGGGAGCTACACTATCACTGCTAGCCATTGTGTACAGTGCAGCTGTGGACCAGGGAACTTGAACCTGTATTGTGCTCCAGCACCTCTGGCAGCATCCTGCTCTAGTATGCAATGCAAAAAGAGCATTCTCATGATTGGAAACACCACCACACAGCCTACAAGTGGTGGATGCAATGTTACAACATGTTCTTACAGCGGCTTTCTCAATGGCACAATACTCACATCCTTGTTTACTTCGCTTCAGCCACAATGCCCAGGTTTACAGGTAATGCCTAATTTTACAGGACCACCGTCAACAACAACATCGATTGGTGTGGCACCATCACCATCACCATCACCTGGGGTTTTGCGATTACCTAAATCTCCATCAAGCATAATTTCTTCTCCTATAATTACAGGATTTGCTCCTGCAAATGGACCAACTGGCAGCAGCTCCTCTGCTCCCGAGTCACTTAGATGGGTTTCCATTGCAAGCTTTTTGCTCTTAGGCTTACCATTTGTAATTCATTTTGGTGATTTCCAATTATTTCACTAA___AATATATTTGAATTTCAAATCATCATTTTTGTGCACAGAGGTGAGAGAGGCATGCATAAATTCCAGCAGAGAAGTTTTGTATAGCAATTGCCACCTTGAACTACTAAGCTGTCGTGTAAATTTTCAAGCAAGGTCATTGCATATCATGGATACCATATTTCTGTCTAATATTATTTTATGGTAAAATTGCATCTATTAGCCATCTCTTTGATTGAATTCTGAATGAGAATTGTCGACAAATCACA

Fln Alignment:

sp_v1.1_unigene27583___MQCKKSILMIGNTTTQPTSGGCNVTTCSYSGFLNGTILTSLFTSLQPQCPGLQVMPNFTGPPSTTTSIGVAXXXXXXXGVLRLPKXXXXXXXXXXXT-GFAPANGPTGSSSSAPESLRWVSIASFLLLGLPFVIHFGDFQLFH
D5ADU4_______________MQCKKSNFMIGNTTIQPTSGGCNVTTCSYSGFLNGTILTSLVTSLQPQCPGIQVMPNFTGPPSTSTSTSVA--MAPSPGVLSLPKSPSGGTSSSIITGGFAPANGPTGSSSSAPKLFRWVSIESFLLLGLPFVIRFGDWQLLH

SNPs (tot: 54)

Position	A %	C %	G %	T %	Probability
73	25	75			0.996473
74		75		25	0.996473
75		75		25	0.996473
76	75		25		0.996473
77	75		25		0.996473
78	75		25		0.996473
79	75		25		0.996473
80		75		25	0.996473
102			25	75	0.996473
139		25		75	0.996473
145		75		25	0.996473
168	25	75			0.996473
169		25		75	0.996473
219		75		25	0.996473
235			75	25	0.996473
571		50	50		1.0
682		85		14	0.993533
723			81	18	1.0
725	87			12	0.999964
727	12			87	0.999964
730	12			87	0.999964
892			35	64	1.0
997		88	11		0.923564
998	88		11		0.923564
1023			81	18	0.999994
1025			18	81	0.999994
1027			18	81	0.999994
1028	18	81			0.999994
1029		18		81	0.999994
1031	81			18	0.999994
1037	81			18	0.999994
1038		81	18		0.999994
1039	81			18	0.999994
1040	81	18			0.999994
1085			10	90	0.90298
1086	10			90	0.90298
1087	90	10			0.90298
1089	90			10	0.90298
1090			90	10	0.90298
1092			10	90	0.90298
1093	87	12			0.992554
1097		87		12	0.992554
1101	87	12			0.992554
1103		12		87	0.992554
1302		8		91	0.999766
1303	8	4		87	0.999414
1304		8	4	87	0.999414
1306		8	91		0.999766
1307	12	87			1.0
1398	41		58		1.0
1416	70			29	1.0
1493	47		52		1.0
1554			14	85	0.993533
1561		20		80	0.995493

SSRs (tot: 1)

Start position	End position	Sequence	Length
1143	1164	CACCAT CACCAT CACCAT CACC	22

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain