SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene27564

Length: 1287 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene27564

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Arabinogalactan-like protein n=1 Tax=Pinus taeda RepID=Q41072_PINTA	-	-	70%
FL-Next	tr=Arabinogalactan-like protein; Pinus taeda (Loblolly pine).	-	-	98%
Blast2go	arabinogalactan-like protein	-	-	90%

Source	InterPros	Term	Type	e value	Identity
Blast2go	FAS1 domain	IPR000782	-	0.0	90%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: Q41072

Fln msg:

Fln protein: MEKIMVLVCIMSFTILGLSSAQEINHAAAVSLATAPAAAATPAAPAPSPASLNLSGILDKAGQFNTFLSLLKSTQVGMQLQSQLNNSQQGITIFAPSDAAFAALKPGALNSITDQDKIALLQYHALPSYYTFSQFQTVSNPVRTMASGNGGPFGVNVTAFGNSVNVSTGLVNTPVNSAVYSQSPVAVYQVDKVLLPEEIFGVKPPAAAPTPEPGAPVSSPAVSPSGASASGASSSSACGSMAALAKGLYIVFLAAGALVLVISS*

Protein Length: 266

Fln nts: GTAACTCACGTCAACATGACAAAACTGAGCTCGTGCCGAATTCGGCACGAGGCCCAGTTAGCATAATACATATTCTCTCCCAGTACGAGTACCAGTCCCACTCCCACTCCCACATTCCCACAGTCTCAGTCCCAATCCTTAGGTTCCAAT_-_ATGGAGAAAATTATGGTCCTCGTCTGCATCATGAGCTTCACGATCCTCGGGCTCTCCTCGGCCCAGGAAATCAACCACGCCGCCGCCGTATCTCTGGCCACCGCTCCGGCCGCCGCCGCGACCCCCGCGGCTCCGGCTCCCTCCCCGGCGTCCCTAAACCTGTCGGGCATCCTCGACAAGGCCGGGCAGTTCAACACCTTCCTGAGCCTCCTCAAGAGCACGCAGGTGGGCATGCAGCTCCAGAGCCAGCTGAACAATTCGCAGCAGGGGATCACGATCTTCGCCCCCTCGGATGCTGCCTTCGCGGCTTTGAAACCCGGGGCTCTGAACTCCATTACGGACCAGGACAAGATCGCCCTGCTGCAATACCACGCGCTGCCCAGCTACTACACCTTCAGTCAGTTTCAGACGGTCAGCAACCCGGTGAGAACCATGGCGTCCGGTAACGGCGGACCCTTCGGCGTCAACGTCACCGCATTCGGCAACAGCGTCAACGTGTCCACAGGTCTCGTCAACACTCCCGTCAACAGCGCAGTTTATTCTCAGAGCCCCGTGGCGGTCTACCAGGTCGACAAGGTCCTCCTGCCGGAAGAAATCTTCGGCGTCAAGCCTCCGGCCGCAGCTCCGACTCCCGAACCCGGGGCTCCCGTCTCCTCTCCCGCTGTTTCTCCCTCTGGCGCATCTGCTTCCGGAGCTTCTTCAAGCTCCGCCTGTGGATCCATGGCGGCCCTGGCAAAGGGCCTCTACATTGTTTTCCTCGCTGCGGGTGCCCTCGTGCTCGTCATTTCTTCGTAG___CGCCTGTCGTTTAAATGTAAGATCCGGGCGGTGAGGGTGAATTGTTTTATTGGGTTTTTACTAGATTACCTGTTCGTTCCTGCTTCGTTGCCTTTGTCGTTGTGGGGTGGTGAAATAAAGGTCATTCTTTGATTGCGGTGATTGGGTTTTCGAATTCCGTTGCAGACAGAGGGGTAAATACAGATTTTGTATGTGGATTGTGAATGTTATGTAACCACGTTCATAGATCAATGAAATTCTTACTATTTGGTAAGTAATCGTTGCTTCAGTGAATCTTTTGTAAGATGTCATAGTAAATCTTTTTTCATTCATTAATATTTAATAAAATAAATATTTTTTTGT

Fln Alignment:

sp_v1.1_unigene27564___MEKIMVLVCIMSFTILGLSSAQEINHXXXXXXXXXXXXXXXXXXXXXXXXXXNLSGILDKAGQFNTFLSLLKSTQVGMXXXXXXXXXXXGITIFAPSDAAFAALKPGALNSITDQDKIALLQYHALPSYYTFSQFQTVSNPVRTMASGNGGPFGVNVTAFGNSVNVSTGLVNTPVNSAVYSQSPVAVYQVDKVLLPEEIFGVKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAKGLYIVFLAAGALVLVISS
Q41072_______________MEKIMVLVCIMSFTILGLSSAQEINHAAAVSLATAPAAAATPAAPAPSPASLNLSGILDKAGQFNTFLSLLKSTQVGMQLQSQLNNSQQGITIFAPSDAAFAALKPGALNSITDQDKIALLQYHALPSYYTFSQFQTVSNPVRTMASGNGGPFGVNVTAFGNSVNVSTGLVNTPVNSAVYSQSPVAVYQVDKVLLPEEIFGVKPPAAAPTPEPGAPVSSPAVSPSGASGSGASTSSACGSMAALAKGLYLVFLAAGALVLVISS

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
1107		14	85		1.0
1211	14			85	0.999981
1213	76	23			1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
96	113	TCCCAC TCCCAC TCCCAC	18

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain