SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene27519

Length: 1929 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene27519 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Magnesium-chelatase subunit H, putative (EC:6.6.1.2); K03403 magnesium chelatase subunit H [EC:6.6.1.1]	-	-	86%
FL-Next	tr=Magnesium-chelatase subunit H, putative; Ricinus communis (Castor bean).	-	-	86%
Blast2go	at5g13630 msh12_9	-	-	91%

Source	ECs	Term	Type	e value	Identity
AutoFact	Magnesium chelatase.	EC:6.6.1.1	-	0.0	86%

Source	KEGGs	Term	Identity
AutoFact	Porphyrin and chlorophyll metabolism	00860	86%
AutoFact	Metabolic pathways	01100	86%
AutoFact	Biosynthesis of secondary metabolites	01110	86%

Source	GOs	Term	Type	Identity
Blast2go	ligase activity	GO:0016874	Molecular Function	91%
Blast2go	chloroplast	GO:0009507	Cellular Component	91%
Blast2go	mitochondrion	GO:0005739	Cellular Component	91%

Source	InterPros	Term	Type	e value	Identity
Blast2go	CobN/magnesium chelatase	IPR003672	-	0.0	91%
Blast2go	NAD(P)-binding domain	IPR016040	-	0.0	91%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: B9T1G0

Fln msg: your sequence is shorter than subject: 572 - 1367

Fln protein: ACYWTATLLAMEAVATLVNIAALDRPEDEIYSLPGILAEAVYRNIEDIYRNNDSGILKDVELLKQITEASRGAISAFVDRTTNKRGQVVNVAETIGSFLGFGRKEPWIEYLEKTRFRSADQEKLGTLFGFLSECLKLVVADNELGGLKQALEGCYVLPGPGGDPIRNPKVLPTGKNIHALDPQAIPTVAAMQSAKVVVERLLERQKADNDGKYPETIALVLWGTDNIKTYGESLAQVLWMVGVKPVADALGRVNKVEPVLLEELGRPRIDVVVNCSGVFRDLFINQMNLLDRAIKMVAELDEPLEMNYVRKHASEQAQTLGIGVREAATRVFSNASGSYSSNVNLAVENSSWNDEKQLQDMYVSRKSFAFDSDAPGAGMKENKQVFEMALSTAEATFQNLDSSEISLTDVSHYFDSDPTNLVQNLRKDKKKPNAYIADTTTANAQVRTLSETVRLDARTKLLNPKWYEGMLSSGYEGVREIEKRLTNTVGWSATSGQVDNWVYEEANSTFIADEDMLKRLLETNPNSFRKLVQTFLEANGRGYWETSEQNLERLRQLYSEVEDKIEGIDRT*

Protein Length: 573

Fln nts: TTGCATGTTATTGGACAGCCACCTTACTTGCAATGGAAGCTGTTGCTACTCTAGTTAACATAGCTGCCCTAGATAGACCTGAGGATGAAATCTATTCTTTGCCGGGGATTCTTGCAGAAGCAGTATATCGAAATATAGAAGATATTTACAGAAATAATGACAGTGGAATCCTAAAAGATGTAGAGTTGTTAAAGCAGATAACAGAAGCATCCCGGGGGGCCATCTCTGCATTTGTTGACAGGACAACAAACAAGAGAGGTCAAGTGGTCAATGTTGCAGAGACTATTGGTTCATTTCTTGGATTTGGAAGAAAGGAGCCTTGGATTGAGTATCTAGAAAAGACAAGGTTTCGCTCAGCTGATCAAGAGAAGCTCGGCACTCTCTTTGGATTTCTTTCTGAGTGTCTGAAGCTAGTTGTGGCTGATAATGAACTTGGGGGATTGAAGCAAGCTTTAGAGGGCTGTTATGTATTACCTGGACCTGGAGGTGATCCAATCAGAAATCCCAAGGTGCTGCCCACTGGCAAAAACATCCATGCACTGGATCCACAAGCAATCCCAACAGTGGCAGCAATGCAGAGTGCCAAAGTGGTAGTTGAACGGCTTCTGGAACGCCAGAAAGCAGACAATGATGGGAAGTACCCAGAAACAATTGCTTTGGTTCTTTGGGGAACAGATAACATCAAGACTTATGGTGAATCACTTGCGCAGGTTTTGTGGATGGTTGGTGTGAAACCTGTTGCAGATGCTCTAGGTCGAGTCAACAAAGTGGAACCTGTGCTGCTGGAGGAGCTTGGACGACCTCGTATTGATGTGGTAGTGAATTGTTCAGGAGTTTTCAGAGACTTGTTTATCAATCAGATGAATCTTCTTGATCGAGCAATAAAAATGGTTGCTGAGCTTGATGAACCTTTGGAAATGAACTATGTAAGAAAGCATGCCTCGGAACAAGCTCAAACACTGGGAATTGGAGTACGTGAGGCTGCCACACGTGTATTTTCAAATGCCTCTGGATCCTACTCATCTAATGTCAATTTAGCAGTTGAAAATTCTTCTTGGAATGATGAAAAACAGCTCCAGGATATGTATGTTAGCAGGAAATCCTTTGCCTTTGATTCTGATGCACCAGGGGCAGGCATGAAGGAGAACAAGCAAGTATTTGAAATGGCTTTATCAACAGCAGAGGCCACTTTCCAGAACCTTGATTCATCTGAGATATCTCTTACAGATGTGAGCCATTACTTTGACTCAGACCCAACAAACCTTGTACAGAACTTAAGAAAAGACAAGAAAAAGCCAAACGCATATATTGCAGACACCACTACTGCAAATGCACAGGTCAGGACTCTGTCTGAGACAGTCAGGCTAGATGCCAGGACAAAGCTACTTAATCCTAAATGGTATGAAGGAATGCTTTCTAGCGGATATGAAGGTGTTAGGGAGATTGAGAAGAGACTGACAAATACCGTGGGATGGAGTGCTACATCCGGTCAAGTGGATAACTGGGTTTATGAGGAAGCCAATTCCACTTTCATAGCAGATGAAGACATGTTAAAGAGGTTACTAGAGACAAACCCAAATTCATTTAGAAAGCTAGTGCAGACATTTTTAGAGGCAAATGGGCGAGGTTACTGGGAGACTTCTGAGCAGAATCTGGAGAGATTAAGGCAGTTATATTCTGAGGTTGAAGACAAAATTGAAGGCATCGATAGGACTTAA___TATGTCCAGTGTAACTGAAGTGGCATTTTAGGATTAGGCTCTTTTTCATTATGTTTTTCGTTTGAAGTTTCTATTTTTTATTTTCATGTCTTTCACTGTATGTATATGTAAGCACTAAGTAATTTCAATCAGCGTCCCAGTTTGTATGCTGCAGAACAAAAGCATCATTTATTAAATTAATTCCAAGGTAATTAACTCACCTTATTTTCAG

Fln Alignment:

sp_v1.1_unigene27519___AMEAVATLVNIAALDRPEDEIYSLPGILAEAVYRNIEDIYRNNDSGILKDVELLKQITEASRGAISAFVDRTTNKRGQVVNVAETIGSFLGFGRKEPWIEYLEKTRFRSADQEKLGTLFGFLSECLKLVVADNELGGLKQALEGCYVLPGPGGDPIRNPKVLPTGKNIHALDPQAIPTVAAMQSAKVVVERLLERQKADNDGKYPETIALVLWGTDNIKTYGESLAQVLWMVGVKPVADALGRVNKVEPVLLEELGRPRIDVVVNCSGVFRDLFINQMNLLDRAIKMVAELDEPLEMNYVRKHASEQAQTLGIGVREAATRVFSNASGSYSSNVNLAVENSSWNDEKQLQDMYVSRKSFAFDSDAPGAGMKENKQVFEMALSTAEATFQNLDSSEISLTDVSHYFDSDPTNLVQNLRKDKKKPNAYIADTTTANAQVRTLSETVRLDARTKLLNPKWYEGMLSSGYEGVREIEKRLTNTVGWSATSGQVDNWVYEEANSTFIADEDMLKRLLETNPNSFRKLVQTFLEANGRGYWETSEQNLERLRQLYSEVEDKIEGIDR
B9T1G0_______________AMEAVATLVNIAALDRPEDEISSLPSILAETVGRNIEDVYRGSNKGILKDVELLKQITEASRGAISAFVERTTNNKGQVVNVSDKLTSILGFGVNEPWIQYLSNTKFYRADREKLRVLFQFLGECLKLVVADNELGSLKQALGGKYVEPGPGGDPIRNPKVLPTGKNIHALDPQAIPTTAAMQSAKIVVDRLVERQKADNGGKYPETVALVLWGTDNIKTYGESLAQVLWMIGVRPISDTFGRVNRVEPVSLEELGRPRIDVVVNCSGVFRDLFINQMNLLDRAVKMVAELDEPAEQNYVRKHALEQAAALGIDIREAATRVFSNASGSYSSNINLAVENSSWNDEKQLQDMYLSRKSFAFDCDAPGAGMMEKRKVFEMALSTAEATFQNLDSSEISLTDVSHYFDSDPTNLVQNLRKDGKKPNAYIADTTTANAQVRTLAETVRLDARTKLLNPKWYEGMMSSGYEGVREIEKRLTNTVGWSATSGQVDNWVYEEANSTFIQDEEMLNRLMSTNPNSFRKLLQTFLEANGRGYWETSQENIEKLRQLYSEVEDKIEGIDR

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
1646	80	20			0.995493
1754			25	75	0.996473
1755		25		75	0.996473
1756		25		75	0.996473
1757		25		75	0.996473
1788		20		80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain