SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene27513

Length: 404 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene27513
GATGAATGGTCCTATTCCAGCGGAGTTGGGCCGGCTTAAAGCTTTGCAAGTTCTTAACCTCTTTGACAGTGGGTTGGAGGGTCCTATTCCAGCGGAGCTGGGCCAGCTTAAAGCTTTGAGAGTACTTATCCTCACTTACAATGCACTCAACGGTTCTATTCCAGCGGACTTGGGCCTGCTGCAGAAACTAGAGATGCTGCAGAAACTAGAGACACTGCTTCTGGAAGGCAATGAATTTTCAGGCAATATACCGCATCAGTTAGGTAATTTGACGAAACTTAAACAACTATCGATTTCTGGCTTCAGTATTTCTGGGTCTATTCCTCCCAAAATATTCATGCTTCCCCTCTCTTCTCTATATCTTAGTCTTAACCACACAACAAGCCTACCTAAAGCCATTGGCA

Ace file of the UniGene sp_v1.1_unigene27513

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	42%
Blast2go	hcr2-	-	-	5.56133e-12	58%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Leucine-rich repeat	IPR001611	-	5.56133e-12	58%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PTA1

Fln msg: Distance to subject end: 45 aas, your sequence is shorter than subject: 134 - 946

Fln protein: MNGPIPAELGRLKALQVLNLFDSGLEGPIPAELGQLKALRVLILTYNALNGSIPADLGLLQKLEMLQKLETLLLEGNEFSGNIPHQLGNLTKLKQLSISGFSISGSIPPKIFMLPLSSLYLSLNHTTSLPKAIG

Protein Length: 135

Fln nts: GATGAATGGTCCTATTCCAGCGGAGTTGGGCCGGCTTAAAGCTTTGCAAGTTCTTAACCTCTTTGACAGTGGGTTGGAGGGTCCTATTCCAGCGGAGCTGGGCCAGCTTAAAGCTTTGAGAGTACTTATCCTCACTTACAATGCACTCAACGGTTCTATTCCAGCGGACTTGGGCCTGCTGCAGAAACTAGAGATGCTGCAGAAACTAGAGACACTGCTTCTGGAAGGCAATGAATTTTCAGGCAATATACCGCATCAGTTAGGTAATTTGACGAAACTTAAACAACTATCGATTTCTGGCTTCAGTATTTCTGGGTCTATTCCTCCCAAAATATTCATGCTTCCCCTCTCTTCTCTATATCTTAGTCTTAACCACACAACAAGCCTACCTAAAGCCATTGGCA

Fln Alignment:

sp_v1.1_unigene27513___MNGPIPAELGRLKALQVLNLFDSGLEGPIPAELGQLKALRVLILTYNALNGSIPADXXXXXXXXXXXXXXXXXXXXNEFSGNIPHQLGNLTKLKQLXXXXXXXXXXXXXXXXMLPLSSLYLSLNHTTSLPKAI
C0PTA1_______________LSGAIPVDLGSLQKLQILDLSDNALDNIIPPSLGNCSSLQDLSLSSNRLSGSIP------HHLGNLSSLQTLFLSSNRLSGSIPHHLGNLRNIQTLEISNNNISGLLPSSIFNLPLSYFDFSFNTLSGISGSI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain