SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene27502

Length: 1238 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene27502

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Snf7 multi-domain protein	-	-	2.0e-20	20%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	99%
Blast2go	snf7 family protein	-	-	0.0	92%

Source	GOs	Term	Type	Identity
Blast2go	endosome transport via multivesicular body sorting pathway	GO:0032509	Biological Process	92%
Blast2go	growth	GO:0040007	Biological Process	92%
Blast2go	embryonic axis specification	GO:0000578	Biological Process	92%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Snf7	IPR005024	-	0.0	92%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NMS6

Fln msg:

Fln protein: MGGSAEKLMNQIMDLKITSKSLQRQARKCEKEEKAEKLKVKKAIEKGNMDGARIYAENSIRKHNEQLNYMRLASRLDAVVSRLDTQAKMMTINKSMTSIVKALDSALATGNLQKMSETMDQFEAQFVNMEVQSQFVENAMAGSTSLSTPEDQVNTLMQQVADDYGLEVSVGLPQAAGHAIPTKPEKVEEDDLSRRLAELKSRG*

Protein Length: 205

Fln nts: TTAGCTTTGATGGATCCCCAAACCTATGGGAACAAGAGCCCAACAAATTTATATAACCTCATTGTGAAGCTTAGTGTTGGACAAAAGGAAAGGCTGAGGAAGATACCACCATCCCAGGGTTTCACGCTTGGATCATCCAGGGCCAAATCAACCAAGAGTCTCAAACAGCATCGTTGTGTTTTTCCGCGGAACCCTGAGCTGAAATCAAATTGTCCAGGAATCTTTACCATTTTGAGTATTTTTATCAAATTCA_-_ATGGGGGGAAGTGCTGAGAAATTGATGAATCAGATCATGGATCTGAAAATCACTTCCAAGTCCCTGCAGAGGCAGGCAAGAAAGTGTGAAAAGGAAGAGAAGGCTGAGAAGCTTAAGGTTAAGAAGGCCATAGAGAAAGGAAACATGGATGGAGCTCGGATATATGCGGAGAACTCCATCAGAAAACACAACGAACAATTGAACTACATGCGGTTGGCTTCCCGCTTGGATGCTGTGGTGTCCAGGCTTGATACCCAAGCAAAAATGATGACAATCAACAAATCCATGACATCTATTGTTAAGGCATTGGATAGTGCCCTTGCAACTGGTAATCTTCAAAAGATGTCTGAAACAATGGATCAATTTGAAGCACAATTTGTGAATATGGAGGTTCAGTCTCAATTTGTTGAGAATGCTATGGCCGGTAGCACATCTCTGTCAACACCAGAGGATCAAGTCAACACTTTGATGCAGCAAGTGGCTGATGATTATGGGCTTGAGGTATCTGTTGGCCTACCTCAGGCCGCTGGGCATGCAATTCCTACAAAGCCGGAGAAAGTTGAAGAGGATGATCTGAGTAGGCGTCTTGCAGAGCTCAAATCCAGGGGCTGA___CCATTCCATTTTTCTAGCATTACTGTAAGAACTTTAACTTTTGGTAATTATGTCTTAAATGCCAAATGATGTTGAAAATACCCCCTCTTTGTGTTATGGTAACATAGAGCAGACATATATTTGTCTGTTAAGAACTGCTATTGTGGATAAATGCTTTTGTTTTTCTATAAGTAGTGGTAATGAATTTGGATTGCGGTGGAATTATCCGTCTCTGGCTTTGGAATTAAAAACACAAAAAAGCTGTTTAGTAGTTTCAGATACTAATTAGTCTTTCTTTGCTCTCTGGGTCTTGCACCAAATTTACTATGTATCATTTTGTACATTAATCTCAATGCATCTTGTCTCTGATTTGGTAGAAAAAAGTGATGTTTGA

Fln Alignment:

sp_v1.1_unigene27502___MGGSAEKLMNQIMDLKITSKSLQRQXXXXXXXXXXXXXXXXXXXXXGNMDGARIYAENSIRKHNEQLNYMRLASRLDAVVSRLDTQAKMMTINKSMTSIVKALDSALATGNLQKMSETMDQFEAQFVNMEVQSQFVENAMAGSTSLSTPEDQVNTLMQQVADDYGLEVSVGLPQAAGHAIPTKPEKVEEDDLSRRLAELKSRG
A9NMS6_______________MGGSAEKLMNQIMDLKITSKSLQRQSRKCEKEEKAEKLKVKKAIEKGNMDGARIYAENSIRKHNEQLNYMRLASRLDAVVSRLDTQAKMMTINKSMTSIVKALDSALATGNLQKMSETMDQFETQFVNMEVQSQFVENAMAGSTSLSTPEDQVNTLMQQVADDYGLEVSVGLPQAAGHAIPTKPEKVEEDDLSRRLAELKSRG

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
703	75		25		0.996473
1033	22		77		0.999999
1081	14		85		0.993533
1125		10		90	0.90298
1184			87	12	0.992554
1185			12	87	0.992554

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain