SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene27499

Length: 1525 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene27499

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Xyloglucan endotransglucosylase/hydrolase 2 n=1 Tax=Rosa x borboniana RepID=Q2MK81_9ROSA	-	-	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	51%
Blast2go	endoxyloglucan transferase	-	-	67%

Source	InterPros	Term	Type	Identity
Blast2go	Glycoside hydrolase, family 16	IPR000757	-	67%
Blast2go	Glycoside hydrolase, family 16, active site	IPR008263	-	67%
Blast2go	Concanavalin A-like lectin/glucanase	IPR008985	-	67%
Blast2go	Xyloglucan endo-transglycosylase, C-terminal	IPR010713	-	67%
Blast2go	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	67%
Blast2go	Xyloglucan endotransglucosylase/hydrolase	IPR016455	-	67%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NTM6

Fln msg:

Fln protein: MGIRGTIVLVIFLLLSPFCAAAARTSQIELKDQTSDDFDQNFYITWGKNLVKFLDNHRAVQLVMNRSSGSGFASNNRYLFGYFSMQIKLIPGDSSGTVTAFYFSTQQTSNHDEVDFEFLGNKPGKPHYLHTNVFVDGVGNRESRIDLWFDPTADFYTYSLLWNRYYILFMVAGVVVRVFKNSQKTLGVPYPSSKPMQVIASIWNGETWATDGGRTKINWTQAPFIATFKGFDIEGHKCDGDSKSSPFCRSSPSSEWWENMGSKGLSAEQMRQLRWVRRNYLAYDYCTDKTRFPKPPPDCSVNNA*

Protein Length: 306

Fln nts: GTTGAGCAGAGTCGTGCCAATAGTCATGGCGCATAACCATCGCATAAAATTGCGAATTCAGTCCCTCCATTGTTTTCATGAACGCACAAACTCTTCCTACTCCCTTTCCTTCTCGGCGTTCAACTTTACAGCAAACCTCTCCACCTCTCCCTTTCATGCCTGTATGGTCCACTTGTCCATTTCCTTATAAATTCTCTCCAAAACCCACATCGTCACATATTTCGCCTAAGTTTTAATACTCGGTGTCTGATCCGTCTCC_-_ATGGGAATACGAGGAACTATAGTATTGGTCATTTTTCTCTTACTTTCTCCATTTTGTGCAGCGGCTGCAAGAACTTCTCAGATTGAGCTCAAGGATCAAACCAGCGATGATTTCGACCAGAATTTCTATATCACATGGGGTAAAAATCTCGTAAAATTCCTGGACAACCATCGGGCTGTTCAGCTTGTCATGAACCGATCTTCAGGTTCAGGCTTCGCATCCAACAACAGATACTTGTTTGGCTATTTCAGTATGCAAATCAAATTGATACCAGGCGATTCATCCGGGACAGTCACTGCCTTCTATTTTTCTACCCAACAAACCTCTAACCACGACGAGGTGGACTTTGAGTTTCTGGGAAACAAACCCGGAAAACCTCATTACCTCCACACCAATGTTTTTGTCGACGGCGTTGGCAACAGGGAGAGCCGAATCGACCTTTGGTTCGACCCCACTGCTGACTTCTACACTTATTCTCTTCTTTGGAACCGCTACTATATCCTGTTCATGGTGGCTGGAGTTGTTGTGAGAGTCTTTAAAAACTCTCAGAAAACCCTGGGAGTTCCTTACCCATCATCGAAGCCTATGCAAGTTATTGCCAGTATTTGGAATGGCGAAACCTGGGCCACCGATGGAGGAAGGACAAAGATAAACTGGACGCAGGCCCCTTTCATAGCTACTTTCAAAGGTTTCGATATTGAAGGTCACAAGTGCGACGGAGATTCTAAGTCCTCTCCATTTTGTCGATCCTCTCCCTCTTCAGAGTGGTGGGAGAATATGGGCAGCAAAGGATTGAGTGCAGAACAAATGAGGCAGCTGAGATGGGTGAGAAGAAATTACCTGGCTTATGACTATTGCACGGACAAAACCAGATTTCCCAAACCTCCTCCTGACTGTTCAGTTAATAACGCGTGA___AGAACAGAACAGGCTACAATCGGTGTTTGGCATTGATTCATTCATTGGTTCACTATTGATTGCTTCACAGTGAATGGGAAACAATGTGCTGAGATCCAAACTTTGTGATTTTTGAGATCACTAAAAATTTTCCAGATGTCATAATGGAGTTGTTACCTGAAGTCTATACAATTTTAAGTTACTTCTCCAGATTTCATGTCATTACAGATTAATATAACGCCATCTAGGGTTATTTCTTGGATTTTTGTTTGGTTGAGGTAAAGAACGCTTATACCATTTGAAAAATAATTTTATTGTGTGTTTCACGATAAAAGGTTACTTTATAATGGTTGAATTTTTAACTTATGGTCC

Fln Alignment:

sp_v1.1_unigene27499___FDQNFYITWGKNLVKFLDNHRAVQLVMNRSSGSGFASNNRYLFGYFSMQIKLIPGDSSGTVTAFYFSTQQTSNHDEVDFEFLGNKPGKPHYLHTNVFVDGVGNRESRIDLWFDPTADFYTYSLLWNRYYILFMVAGVVVRVFKNSQKTLGVPYPSSKPMQVIASIWNGETWATDGGRTKINWTQAPFIATFKGFDIEGHKCDGDXXXXXXXXXXXXXEWWENMGSKGLSAEQMRQLRWVRRNYLAYDYCTDKTRFPKPPPDCSVN
A9NTM6_______________FNNNFEISWGT--VRLLNNSQTVQLTMDKASGSGFQSINQYLFGSVSVGIKLVSGNSAGTVTSYYMSSEG-SFHDELDFEFLGNLPGKPYVLQTNVFGSGVGNREQRFHLWFDPTMDFHNYSILWNHQQIVFWVDSTPIRVFKNNE-AAGVPYLNRRPMKVISSLWNGEDWATDGGRVKTDWSKAPFVASYQSFEVDACSVSAQ------SSSPCANDWWDQSGFQSLNQHQLTRLDWVRKNYMTYDYCRDASRFPKPPTECALN

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
241		50		50	1.0
256		50		50	1.0
361		66	33		1.0
368	33		66		1.0
687	14		85		0.993533
1153		33	66		1.0
1235			37	62	1.0
1267		50	50		1.0
1270	50	50			1.0
1285		50		50	1.0
1305			40	60	1.0
1393	30		70		1.0
1421			66	33	0.997452
1425	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain