SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene27484

Length: 1230 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene27484

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Calmodulin-2 n=47 Tax=Eukaryota RepID=CALM2_PETHY	-	-	95%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	100%
Blast2go	calmodulin	-	-	99%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	0.0	99%

Source	InterPros	Term	Type	Identity
Blast2go	Calcium-binding EF-hand	IPR002048	-	99%
Blast2go	EF-hand-like domain	IPR011992	-	99%
Blast2go	EF-Hand 1, calcium-binding site	IPR018247	-	99%
Blast2go	EF-hand	IPR018248	-	99%
Blast2go	EF-HAND 2	IPR018249	-	99%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NRI1

Fln msg:

Fln protein: MAEQLTEDQIAEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMISEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFKVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQVNYEEFVRMMLAK*

Protein Length: 151

Fln nts: CTCACGTCAATAGACAATACCCACGTCGGCTGAGTCAAAACAACGGGAGATCTTATTTGAGAAGGACCCTACATAATCTGGTTCACCGTTTATTAATTTCCCATATCATTTGGCGATCCACAGCCGTCGATCACCTTGACTGATCTAACGGACCAGAGTCCCCGTGAAAAGTTCTTATTCCTTTCCTAGCGCAACGCATCCAGGCAATTTCAGGGTGCACTGTCGTTTCTCAGTTGATCGAGTTTAAAAGCTGCGAGGGATTTCATCATACGCCATAGTTTCCTCTCTGGTATTTTTGCGAAGCTAATAGATTTGCGTTTGCCCGTTTCGATCCGACTATCCAGTGCAA_-_ATGGCGGAGCAGTTGACCGAGGATCAGATCGCAGAGTTCAAGGAGGCTTTCAGTCTGTTTGACAAAGATGGCGATGGCTGCATTACTACCAAAGAATTGGGTACTGTTATGCGCTCTCTAGGACAGAATCCAACTGAAGCTGAACTTCAGGACATGATCAGTGAAGTTGATGCTGATGGAAATGGGACAATTGATTTTCCAGAGTTCCTGAACCTTATGGCTCGAAAGATGAAGGATACTGACTCAGAGGAAGAGTTGAAAGAGGCCTTCAAGGTTTTTGACAAGGATCAAAATGGTTTCATATCTGCCGCAGAGCTGCGGCATGTGATGACCAACTTGGGAGAAAAACTAACTGACGAAGAAGTTGATGAGATGATCCGTGAGGCTGATGTTGATGGAGATGGTCAAGTCAACTATGAGGAGTTTGTCAGGATGATGTTGGCAAAATGA___GATGAATGTAAACCTTAGCATATTTTAAACATAATCGGGGTACATTATATAGCTAGCTACCTTCCTGTTTATAATGTTTGTCCGCGGGGAGTATCAATAAGAACAATCGGAGGATGCCCTCTTTTGTTTCCATGTTCTTTGGGCAATCCTCTTTTGTTTTGTTAGAATGCTAAGCGCGGTAGCAAAAGAACCTGAAATTTAAAGTCAGGATGCTGTTTTGAATTTAATTTTGAAATGTGAATTGAGTGGAATGCTTATTTGACATCCAAAAAATTCTCGTTGTATGGACAATGCATTTGCTAGATTTGATCTGTACTTTCACACAAGTCTGTAACTTGAATCTACATCCAAGGAACAAATGCCATTGAATGTGTATTTTAGATTGGAATCTGGTTTTAATCAAGAACGATTTTAAGCCTTGACAATTTTTC

Fln Alignment:

sp_v1.1_unigene27484___MAEQLTEDQIAEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMISEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFKVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQVNYEEFVRMMLAK
A9NRI1_______________MAEQLTEDQIAEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMISEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFKVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQVNYEEFVRMMLAK

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
562	66	33			0.997452
1220	20			80	0.995493
1221	20			80	0.995493
1222	20		80		0.995493
1223	40		60		1.0
1224	20	80			0.995493
1226	50			50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain