SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene27469

Length: 816 nt

Origin of reads: Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene27469

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	1,3-beta-glucan synthase component-like n=2 Tax=Oryza sativa RepID=Q8W0J2_ORYSJ	-	-	51%
FL-Next	sp=Callose synthase 12; Arabidopsis thaliana (Mouse-ear cress).	-	-	65%
Blast2go	transferring glycosyl	-	-	72%

Source	GOs	Term	Type	Identity
Blast2go	defense response by callose deposition in cell wall	GO:0052544	Biological Process	72%
Blast2go	defense response to bacterium	GO:0042742	Biological Process	72%
Blast2go	leaf morphogenesis	GO:0009965	Biological Process	72%
Blast2go	reproduction	GO:0000003	Biological Process	72%
Blast2go	defense response signaling pathway, resistance gene-dependent	GO:0009870	Biological Process	72%
Blast2go	pollen development	GO:0009555	Biological Process	72%
Blast2go	salicylic acid mediated signaling pathway	GO:0009863	Biological Process	72%
Blast2go	leaf senescence	GO:0010150	Biological Process	72%
Blast2go	defense response to fungus	GO:0050832	Biological Process	72%
Blast2go	plasma membrane	GO:0005886	Cellular Component	72%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Glycosyl transferase, family 48	IPR003440	-	0.0	72%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9ZT82

Fln msg: Overlapping hits, possible frame ERROR between 245 and 233, Distance to subject end: 871 aas, your sequence is shorter than subject: 271 - 1780

Fln protein: ESINVEAARFAIIWNEIVRTFREEDIISDLEVELLEVPPSSWNVRVIRWPCLLLCNELLLALNQATEFEGSDKALWxxxxxxEYRYCAVIETYDSVKYLLQNIVKEDSEEHSIILNLFKQIDESLQMGNFTGKYRMSELPEIYMKLISLVNALLIKQSDKGQQNVVDALQNLYDIVVRDFPKERRSLAQLRQDGLVTVRTGNKILFEDALELPDVEDHLFYRRLRRLQTILTTKNSMHHVPKNFEARRRIAFFSNSLFMNMPRAVQVEQMM

Protein Length: 272

Fln nts: TTGAGTCTATTAATGTTGAAGCAGCTAGGTTTGCCATTATATGGAATGAAATAGTGAGAACATTTAGGGAAGAGGATATTATCAGTGACTTAGAGGTTGAACTGTTGGAGGTCCCTCCAAGCTCTTGGAATGTACGTGTCATTCGATGGCCATGCTTATTACTGTGTAATGAGCTGTTGCTTGCCCTAAATCAAGCTACTGAATTTGAGGGTAGTGACAAGGCGCTATGGxxxxxxxxxxxxxxxxxxGAATACCGTTACTGTGCAGTGATAGAAACATATGACAGTGTCAAATATTTGCTCCAGAATATTGTCAAGGAAGATAGTGAAGAACACTCCATTATTCTCAATTTGTTTAAACAAATTGACGAGTCACTGCAGATGGGAAATTTTACAGGAAAATACAGAATGAGTGAACTGCCTGAAATTTATATGAAATTAATATCACTGGTCAATGCTCTTTTGATCAAGCAATCTGACAAGGGCCAGCAAAATGTAGTTGATGCCTTGCAAAATCTCTATGACATTGTTGTAAGAGATTTTCCTAAAGAAAGGCGGAGTCTGGCACAACTGAGGCAAGATGGACTGGTTACTGTAAGGACTGGTAACAAGATATTGTTTGAGGATGCTTTAGAATTACCTGATGTAGAAGACCACCTCTTTTATCGACGGCTAAGAAGATTGCAGACCATTCTAACCACGAAGAATTCCATGCATCATGTTCCGAAAAATTTTGAGGCAAGGCGCAGGATTGCTTTCTTTAGCAATTCTCTCTTCATGAACATGCCCCGTGCCGTGCAGGTTGAGCAGATGATGTC

Fln Alignment:

sp_v1.1_unigene27469___ESINVEAARFAIIWNEIVRTFREEDIISDLEVELLEVPPSSWNVRVIRWPXXXXXXXXXXXXXQATE-FEGSDKALWLxxxxNEYRYCAVIETYDSVKYLLQNIVKEDSEEHSIILNLFKQIDESLQMGNFTGKYRMSELPEIYMKLISLVNALLIKQSDKGQQNVVDALQNLYDIVVRDFPKERRSLAQLRQDGLVTVRTGNKILFEDALELPDVEDHLFYXXXXXXXXXXXXKNSMHHVPKNFEARRRIAFFSNSLFMNMPRAVQVEQMM
Q9ZT82_______________ESNQVEANKFALIWNEIILAFREEDIVSDREVELLELPKNSWDVTVIRWPCFLLCNELLLALSQARELIDAPDKWLWHxxxxNEYRRCAVVEAYDSIKHLLLSIIKVDTEEHSIITVFFQIINQSIQSEQFTKTFRVDLLPKIYETLQKLVGLVNDEETDSGR--VVNVLQSLYEIATRQFFIEKKTTEQLSNEGLTPRDPASKLLFQNAIRLPDASNEDFYRQVRRLHTILTSRDSMHSVPVNLEARRRIAFFSNSLFMNMPHAPQVEKMM

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
680	80		20		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain