SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene27468

Length: 3082 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene27468
CGGCTCTGGAATGACCTTGGACCTCTGGTTGGTGAAACCCTCACCTATAAAGGCCAGGTCATTCCAGAGCCGCTGGGGCGAGACGTCGATAACGCATCGGAGGCAGGTTAGGTCTGAGGTACGGGGCTCCGGTGACGAGATACTCGCAGGTCGTTGAAGCTGGTTAGAGGTTCGAATATCCCAGAGAGATCCTGTTTCTTGTCCCCTTACCTTGGTTTTCCTGATCCTTCCGAATGCAGGCTAATTCGAACACCGTGGAGAGCGGCGCCCAGGGCCTGGGTAAGAGCTTGCTGGAGATATCTCGGCTTGACTATGTTTTGGCTCTTTTCGTGAATGGCAAGGGGGATCTAGGGGCGATGATGGGGTCGGCTGTCGTTTTGAGGGAAAATTCACAACTGTTGATGGTCTTGACTACATCTCTGGCCGTCTTGATTGGTTGTGTTTTGTTCCTTGTTTGGCGGAGAGGGGGATCGGCTCCCTCGAAGCCGCCGGAGAAGCCAACTCCCCTGGTGAAAGAAGAGGAAGAAGAGGAGGAGGATGATTCCGGAAAGAAGAAAGTGACGGTTTTCTTTGGGACTCAGACCGGCACGGCTGAAGGATTTGCCAAGTCTCTCGCCGAGGAAGCGAAAGCTAGGTATGATAAGGCTGTCTTTAAAGTAGTGGATCTGGATGATTATGCAGCAGATGATGAGCTGTATGAAGAAAAATTAAAGAAGGAAAAATTAGCATTTTTTATGCTAGCAACGTATGGAGATGGAGAGCCAACTGATAATGCAGCAAGGTTCTACAAGTGGTTTACTGAGGGGGAAAAAGAGAGAGGGCCTTGGCTTTCCAACCTTACTTATGGGGTATTCGGTTTAGGCAACAGACAATATGAGCATTTCAATAAGGTTGCTTGCACAGTAGATGAAGCATTAAGTGAACAAGGTGGGAAACGGCTTGTTCCAGTGGGCCTTGGTGATGATGATCAGTGCATTGAAGATGACTTTACTGCTTGGCGAGAGCAGGTTTGGCCTGAGCTAGATCAGTTATTGCGTGACGAAGATGATCAACCCTCAAGTGCTACACCTTATACAGCAGCAATACCTCAGTACCGGGTAGAAATTCATGATTCTTCAGTTCCACTTTATGAGGAAACTAATGTAAAGCAGAATGGTCAAGCCATTTATGATATCCATCATCCTTGCAGAGCAAACGTAGCAGTGCGAAGAGAACTTCATACACCATTGTCTGACCGTTCTTGCATTCATTTGGAATTTGATATCACAGATACTGGCGTTACGTATGAGACCGGAGATCATGTTGGCGTCTATGCAGAAAACTTAGATGAAACTGTGGAGGAAGCTGCAAAGTTACTAGGCTACCCACTAGACACAATAATTTCAGTCCACAGTGACAATGAAGATGGTACGCCTCTTGCTGGGAGCTCCTTGCCACCACCCTTCCCTGGTCCATGCACTCTGCAGACTGCTCTTGCTCGTTTTGCAGATTTGTTGAATCCTCCTCGAAAGGCTGCCTTGGTTGCATTGGCTAGTCATGCATCTGATCCAGCTGAAGCTGAGAGGTTGAAGTTTCTTTCATCACCAGCCGGAAAGGATGAGTACTCCCAATGGATTACTGGGAGTCAAAGGAGTCTTTTAGAAGTAATGGCAGAATTTCCATCTGCAAAACCACCTCTCGGTGTCTTCTTTGCAGCAATTGCCCCACGTCTGCAACCTCGATATTACTCTATTTCTTCTTCTCCAAAGTTTTCACCCAATAGAATACATGTAACGTGTGCTCTGGTTTATGGGCCTAGTCCAACTGGCAGAATCCACAAAGGTGTTTGTTCCAATTGGATGAAGAATTCGGTGCCTTCTGAGGAAATCCTTGATTGTAGCTGGGCACCAGTCTTTGTTAGACAGTCAAATTTCAAATTGCCAGCAGATCCTTCAGTTCCTATTGTTATGGTGGGCCCTGGAACTGGTTTAGCACCTTTTAGAGGTTTTTTGCAGGAAAGAGCAGCACTTCAAGAATCTGGAGAGAAGCTCGGGCCAGCTGTTCTTTTCTTTGGGTGCAGGAATCGCCAGATGGACTACATTTATGAAGATGAACTGAAGAACTATGTGGATACTGGCGTATTGACTGATCTTGTTCTTGCTTTCTCTCGTGAAGGAGCAACCAAAGAGTATGTGCAGCACAAGATAGCAGAGAAGGCATCCTATATTTGGAATCTCATTTCTCAAGGTGGCTATCTCTATGTATGTGGTGATGCCAAGGGCATGGCTAGGGATGTGCACAGGACCCTACACAATATCATCCAGGAGCAGGAGTCGGTGGATAGCACCAGTGCAGAGGCTACAGTGAAGAAATTACAGACAGAAGGAAGATATTTACGAGATGTATGGTAATTGAGTGAATTTTGTTCTCGGTCAGTTCAATCTCATCTCGTGCAGAATTCGGTAAGAAGATTCAGGAAAAGAGAAAAGCCTAGCCAAGTATTTATTTGGGAAGAAATCTCCCGGTAAACTGATGCTCAAGTTGATTTCTCACAGAAGTGTGGGATCTTTACAACTCCAAATACTGCATTCCAGGATTTGCTATCACTGTGCCCTTTCGAATTTTCTAGCACCAGTATCACATTAGGACTGGTCTAGAATTGTATTCTTAATTCATTTGTCTAAGAGTTTAGTACAACAAAGCTAAATATCATGCCCTTCAGTTAGAAAACAACTCTCCACGTCATAGAATTTTTAATATATATCTTGGTATGATCTTTTAATACCATACTCGACCGTTCATAATCTACATGGAAAGCTGTCCCTTTCCAGTTTGATATTGTGTTTATCTTCCTTCTATAATGGCATATAAGACACGATACTGAATTGAAGCTTGCGGTGTCATGATACAGTGGATAAGTTTGAGGTGTCTAAATATTGAGATTCTAGATGATTATAAAATAGTTGCTATATATGGGAATCCCTGGTCTGTGTACAATCTTTTTGCAATATTTCTTGTTTTGTCACAGTTCACAACAATCCTAAACTTCATGCATATGTGTAATCTGTTGCTCATGGAAAACAGCTGCTATATTTTAGAATTT

Ace file of the UniGene sp_v1.1_unigene27468

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	NADPH-cytochrome P450 reductase n=1 Tax=Pseudotsuga menziesii RepID=Q40916_PSEMZ	-	-	85%
FL-Next	sp=NADPH--cytochrome P450 reductase; Pseudotsuga menziesii (Douglas-fir) (Abies menziesii).	-	-	91%
Blast2go	cytochrome p450 reductase	-	-	84%

Source	InterPros	Term	Type	Identity
Blast2go	Flavodoxin	IPR001094	-	84%
Blast2go	Oxidoreductase FAD/NAD(P)-binding	IPR001433	-	84%
Blast2go	Flavoprotein pyridine nucleotide cytochrome reductase	IPR001709	-	84%
Blast2go	FAD-binding, type 1	IPR003097	-	84%
Blast2go	Flavodoxin/nitric oxide synthase	IPR008254	-	84%
Blast2go	Ferredoxin reductase-type FAD-binding domain	IPR017927	-	84%
Blast2go	Riboflavin synthase-like beta-barrel	IPR017938	-	84%
Blast2go	NADPH-cytochrome p450 reductase, FAD-binding, alpha-helical domain-3	IPR023173	-	84%
Blast2go	NADPH-cytochrome P450 reductase	IPR023208	-	84%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: Q40916

Fln msg:

Fln protein: MQANSNTVESGAQGLGKSLLEISRLDYVLALFVNGKGDLGAMMGSAVVLRENSQLLMVLTTSLAVLIGCVLFLVWRRGGSAPSKPPEKPTPLVKEEEEEEEDDSGKKKVTVFFGTQTGTAEGFAKSLAEEAKARYDKAVFKVVDLDDYAADDELYEEKLKKEKLAFFMLATYGDGEPTDNAARFYKWFTEGEKERGPWLSNLTYGVFGLGNRQYEHFNKVACTVDEALSEQGGKRLVPVGLGDDDQCIEDDFTAWREQVWPELDQLLRDEDDQPSSATPYTAAIPQYRVEIHDSSVPLYEETNVKQNGQAIYDIHHPCRANVAVRRELHTPLSDRSCIHLEFDITDTGVTYETGDHVGVYAENLDETVEEAAKLLGYPLDTIISVHSDNEDGTPLAGSSLPPPFPGPCTLQTALARFADLLNPPRKAALVALASHASDPAEAERLKFLSSPAGKDEYSQWITGSQRSLLEVMAEFPSAKPPLGVFFAAIAPRLQPRYYSISSSPKFSPNRIHVTCALVYGPSPTGRIHKGVCSNWMKNSVPSEEILDCSWAPVFVRQSNFKLPADPSVPIVMVGPGTGLAPFRGFLQERAALQESGEKLGPAVLFFGCRNRQMDYIYEDELKNYVDTGVLTDLVLAFSREGATKEYVQHKIAEKASYIWNLISQGGYLYVCGDAKGMARDVHRTLHNIIQEQESVDSTSAEATVKKLQTEGRYLRDVW*

Protein Length: 720

Fln nts: CGGCTCTGGAATGACCTTGGACCTCTGGTTGGTGAAACCCTCACCTATAAAGGCCAGGTCATTCCAGAGCCGCTGGGGCGAGACGTCGATAACGCATCGGAGGCAGGTTAGGTCTGAGGTACGGGGCTCCGGTGACGAGATACTCGCAGGTCGTTGAAGCTGGTTAGAGGTTCGAATATCCCAGAGAGATCCTGTTTCTTGTCCCCTTACCTTGGTTTTCCTGATCCTTCCGA_-_ATGCAGGCTAATTCGAACACCGTGGAGAGCGGCGCCCAGGGCCTGGGTAAGAGCTTGCTGGAGATATCTCGGCTTGACTATGTTTTGGCTCTTTTCGTGAATGGCAAGGGGGATCTAGGGGCGATGATGGGGTCGGCTGTCGTTTTGAGGGAAAATTCACAACTGTTGATGGTCTTGACTACATCTCTGGCCGTCTTGATTGGTTGTGTTTTGTTCCTTGTTTGGCGGAGAGGGGGATCGGCTCCCTCGAAGCCGCCGGAGAAGCCAACTCCCCTGGTGAAAGAAGAGGAAGAAGAGGAGGAGGATGATTCCGGAAAGAAGAAAGTGACGGTTTTCTTTGGGACTCAGACCGGCACGGCTGAAGGATTTGCCAAGTCTCTCGCCGAGGAAGCGAAAGCTAGGTATGATAAGGCTGTCTTTAAAGTAGTGGATCTGGATGATTATGCAGCAGATGATGAGCTGTATGAAGAAAAATTAAAGAAGGAAAAATTAGCATTTTTTATGCTAGCAACGTATGGAGATGGAGAGCCAACTGATAATGCAGCAAGGTTCTACAAGTGGTTTACTGAGGGGGAAAAAGAGAGAGGGCCTTGGCTTTCCAACCTTACTTATGGGGTATTCGGTTTAGGCAACAGACAATATGAGCATTTCAATAAGGTTGCTTGCACAGTAGATGAAGCATTAAGTGAACAAGGTGGGAAACGGCTTGTTCCAGTGGGCCTTGGTGATGATGATCAGTGCATTGAAGATGACTTTACTGCTTGGCGAGAGCAGGTTTGGCCTGAGCTAGATCAGTTATTGCGTGACGAAGATGATCAACCCTCAAGTGCTACACCTTATACAGCAGCAATACCTCAGTACCGGGTAGAAATTCATGATTCTTCAGTTCCACTTTATGAGGAAACTAATGTAAAGCAGAATGGTCAAGCCATTTATGATATCCATCATCCTTGCAGAGCAAACGTAGCAGTGCGAAGAGAACTTCATACACCATTGTCTGACCGTTCTTGCATTCATTTGGAATTTGATATCACAGATACTGGCGTTACGTATGAGACCGGAGATCATGTTGGCGTCTATGCAGAAAACTTAGATGAAACTGTGGAGGAAGCTGCAAAGTTACTAGGCTACCCACTAGACACAATAATTTCAGTCCACAGTGACAATGAAGATGGTACGCCTCTTGCTGGGAGCTCCTTGCCACCACCCTTCCCTGGTCCATGCACTCTGCAGACTGCTCTTGCTCGTTTTGCAGATTTGTTGAATCCTCCTCGAAAGGCTGCCTTGGTTGCATTGGCTAGTCATGCATCTGATCCAGCTGAAGCTGAGAGGTTGAAGTTTCTTTCATCACCAGCCGGAAAGGATGAGTACTCCCAATGGATTACTGGGAGTCAAAGGAGTCTTTTAGAAGTAATGGCAGAATTTCCATCTGCAAAACCACCTCTCGGTGTCTTCTTTGCAGCAATTGCCCCACGTCTGCAACCTCGATATTACTCTATTTCTTCTTCTCCAAAGTTTTCACCCAATAGAATACATGTAACGTGTGCTCTGGTTTATGGGCCTAGTCCAACTGGCAGAATCCACAAAGGTGTTTGTTCCAATTGGATGAAGAATTCGGTGCCTTCTGAGGAAATCCTTGATTGTAGCTGGGCACCAGTCTTTGTTAGACAGTCAAATTTCAAATTGCCAGCAGATCCTTCAGTTCCTATTGTTATGGTGGGCCCTGGAACTGGTTTAGCACCTTTTAGAGGTTTTTTGCAGGAAAGAGCAGCACTTCAAGAATCTGGAGAGAAGCTCGGGCCAGCTGTTCTTTTCTTTGGGTGCAGGAATCGCCAGATGGACTACATTTATGAAGATGAACTGAAGAACTATGTGGATACTGGCGTATTGACTGATCTTGTTCTTGCTTTCTCTCGTGAAGGAGCAACCAAAGAGTATGTGCAGCACAAGATAGCAGAGAAGGCATCCTATATTTGGAATCTCATTTCTCAAGGTGGCTATCTCTATGTATGTGGTGATGCCAAGGGCATGGCTAGGGATGTGCACAGGACCCTACACAATATCATCCAGGAGCAGGAGTCGGTGGATAGCACCAGTGCAGAGGCTACAGTGAAGAAATTACAGACAGAAGGAAGATATTTACGAGATGTATGGTAA___TTGAGTGAATTTTGTTCTCGGTCAGTTCAATCTCATCTCGTGCAGAATTCGGTAAGAAGATTCAGGAAAAGAGAAAAGCCTAGCCAAGTATTTATTTGGGAAGAAATCTCCCGGTAAACTGATGCTCAAGTTGATTTCTCACAGAAGTGTGGGATCTTTACAACTCCAAATACTGCATTCCAGGATTTGCTATCACTGTGCCCTTTCGAATTTTCTAGCACCAGTATCACATTAGGACTGGTCTAGAATTGTATTCTTAATTCATTTGTCTAAGAGTTTAGTACAACAAAGCTAAATATCATGCCCTTCAGTTAGAAAACAACTCTCCACGTCATAGAATTTTTAATATATATCTTGGTATGATCTTTTAATACCATACTCGACCGTTCATAATCTACATGGAAAGCTGTCCCTTTCCAGTTTGATATTGTGTTTATCTTCCTTCTATAATGGCATATAAGACACGATACTGAATTGAAGCTTGCGGTGTCATGATACAGTGGATAAGTTTGAGGTGTCTAAATATTGAGATTCTAGATGATTATAAAATAGTTGCTATATATGGGAATCCCTGGTCTGTGTACAATCTTTTTGCAATATTTCTTGTTTTGTCACAGTTCACAACAATCCTAAACTTCATGCATATGTGTAATCTGTTGCTCATGGAAAACAGCTGCTATATTTTAGAATTT

Fln Alignment:

sp_v1.1_unigene27468___MQANSNTVESGAQGLGKSLLEISRLDYVLALFVNGKGDLGAMMGSAVVLRENSQLLMVLTTSLAVLIGCVLFLVWRRGGSAPSKPPEKPTPLVKXXXXXXX-DDSGKKKVTVFFGTQTGTAEGFAKSLAEEAKARYDKAVFKXXXXXXXXXXXXXXXXXXXXXXXAFFMLATYGDGEPTDNAARFYKWFTEGEKERGPWLSNLTYGVFGLGNRQYEHFNKVACTVDEALSEQGGKRLVPVGLGDDDQCIEDDFTAWREQVWPXXXXXXXXXXXXPSSATPYTAAIPQYRVEIHDSSVPLYEETNVKQNGQAIYDIHHPCRANVAVRRELHTPLSDRSCIHLEFDITDTGVTYETGDHVGVYAENLDETVEEAAKLLGYPLDTIISVHSDNEDGTPLAGSSLPPPFPGPCTLQTALARFADLLNPPRKAALVALASHASDPAEAERLKFLSSPAGKDEYSQWITGSQRSLLEVMAEFPSAKPPLGVFFAAIAPRLQPRYYSISSSPKFSPNRIHVTCALVYGPSPTGRIHKGVCSNWMKNSVPSEEILDCSWAPVFVRQSNFKLPADPSVPIVMVGPGTGLAPFRGFLQERAALQESGEKLGPAVLFFGCRNRQMDYIYEDELKNYVDTGVLTDLVLAFSREGATKEYVQHKIAEKASYIWNLISQGGYLYVCGDAKGMARDVHRTLHNIIQEQESVDSTSAEATVKKLQTEGRYLRDVW
Q40916_______________MQSNSNTVESGTQGLGKSLLEISRLDHVFSLFVNGKGDLGGMMESAVVLRENSELLMVLTTSLAVLIACVLLFVWRRGGSAPSKLPEKPTPLGRVEEEEEEEDDSGKKKVTVFFGTQTGTAEGFAKALVEEAKARYDKAVFKVVDLDDYAADDEQYEEKLKKEKLAFFMLATYGDGEPTDNAARFYKWFSETEKERGPWLSNLPYGVFGLGNRQYEHFNKVACTVDEALNEQGGKRLVPVGLGDDDQCIEDDFTAWREQVWPELDQLLRDEDDQPSSATPYTAAIPQYRVEIHDPPVPLYEETYATQNGQAFIDIHHPCRANVAVQRELHTPLSDRSCIHLEFDISGTGLTYETGDHVGVYAENLSDTVEEAAKLLGYPLDTIISVHSDKEDGTPLGGSSLLPPFPGPCTLQTALARYADLLNPPRKAALVALASHASDPAEAERLKFLSSPAGKDEYSQWITVSQRSLLEVMAEFPSAKPPLGVFFAAVAPRLQPRYYSISSSPRYASNRIHVTCALVYGPSPTGRIHKGVCSNWMKNSVPSEKSQYCSWAPVFVRQSNFKLPSDPSVPIVMVGPGTGLAPFRGFLQERAAIQKSGEKLGPAVLFFGCRNRQMDYIYEDELKSYVENGVLTELVLAFSREGATKEYVQHKITEKGSYIWNLIAQGGYLYVCGDAKGMARDVHRTLHSIVQEQESVDSTSAEATVKKLQTEGRYLRDVW

SNPs (tot: 29)

Position	A %	C %	G %	T %	Probability
375	33		66		0.997452
377			33	66	0.997452
378			33	66	0.997452
379			33	66	0.997452
797		11		88	0.923564
813		10	90		0.90298
814	90	10			0.90298
858			10	90	0.90298
861		10	90		0.90298
862	10		90		0.90298
863		88		11	0.923564
864	88		11		0.923564
865	88		11		0.923564
866		88	11		0.923564
905	90		10		0.90298
1461	8	87		4	0.999414
1527		12		87	0.992554
2144		85		14	0.993533
2272	87			12	0.992554
2273	12			87	0.992554
2526			7	92	1.0
2530		92	7		1.0
2533	90			1	1.0
2534		7	92		1.0
2535	92			7	1.0
2536	92			7	1.0
2542			92	7	1.0
2543		7	92		1.0
2989		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain