SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene27461

Length: 957 nt

Origin of reads: Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene27461 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Transporter ATM1, mitochondrial precursor, putative (EC:3.6.3.44)	-	-	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	30%
Blast2go	abc transporter family of the mitochondria family	-	-	82%

Source	ECs	Term	Type	e value	Identity
Blast2go	Nucleoside-triphosphatase.	EC:3.6.1.15	-	0.0	82%

Source	KEGGs	Term	Identity
Blast2go	Purine metabolism	00230	82%
Blast2go	Thiamine metabolism	00730	82%
Blast2go	Metabolic pathways	01100	82%

Source	GOs	Term	Type	Identity
Blast2go	root development	GO:0048364	Biological Process	82%
Blast2go	positive regulation of catalytic activity	GO:0043085	Biological Process	82%
Blast2go	cellular iron ion homeostasis	GO:0006879	Biological Process	82%
Blast2go	pollen development	GO:0009555	Biological Process	82%
Blast2go	chloroplast organization	GO:0009658	Biological Process	82%
Blast2go	response to cadmium ion	GO:0046686	Biological Process	82%
Blast2go	response to cold	GO:0009409	Biological Process	82%
Blast2go	response to lead ion	GO:0010288	Biological Process	82%
Blast2go	regulation of multicellular organism growth	GO:0040014	Biological Process	82%
Blast2go	positive regulation of abscisic acid mediated signaling pathway	GO:0009789	Biological Process	82%
Blast2go	response to oxidative stress	GO:0006979	Biological Process	82%
Blast2go	regulation of chlorophyll biosynthetic process	GO:0010380	Biological Process	82%
Blast2go	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	82%
Blast2go	enzyme activator activity	GO:0008047	Molecular Function	82%
Blast2go	binding	GO:0005488	Molecular Function	82%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	82%
Blast2go	apoplast	GO:0048046	Cellular Component	82%
Blast2go	stromule	GO:0010319	Cellular Component	82%
Blast2go	phragmoplast	GO:0009524	Cellular Component	82%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	82%
Blast2go	chloroplast thylakoid	GO:0009534	Cellular Component	82%
Blast2go	cell plate	GO:0009504	Cellular Component	82%
Blast2go	nucleus	GO:0005634	Cellular Component	82%
Blast2go	mitochondrion	GO:0005739	Cellular Component	82%

Source	InterPros	Term	Type	Identity
Blast2go	ABC transporter, transmembrane domain	IPR001140	-	82%
Blast2go	ABC transporter, transmembrane domain, type 1	IPR011527	-	82%
Blast2go	ABC transporter, integral membrane type 1	IPR017940	-	82%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NW03

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 199 aas, your sequence is shorter than subject: 300 - 636

Fln protein: ILVALGLLVGGKVLNVQVPFLFKLAVDGLSSAVGASSTTVVTTVSNSTLLAFLGTPIAVLIGYGIARGGASACNELRNAVFSKVALRTIRLVARKVFSHLHDLDLQYHLSRQTGALSRTIDRGTRGINFILSSMVFNVVPTILEISMVAGILAYKFGAPFALVTSLAVGGYVAFTLFVTQWRTKFRQVMNKADNDANTRAIDSLINYETVKYFTNEEFEVKKYDEFLKKYEDASLKTQSSLAFLNFGQNIIFSTALSTAMVLCSQGIMAGTMTVGDLVMVNGFAFPTFITTQFPWHRLS*

Protein Length: 301

Fln nts: ATATTAGTAGCTTTGGGGCTTCTAGTAGGTGGCAAGGTTCTAAATGTTCAAGTGCCATTCCTTTTCAAACTTGCAGTAGATGGGTTATCATCTGCTGTTGGAGCTTCCAGCACAACTGTGGTCACTACAGTGTCAAATTCAACTCTTTTAGCATTTCTGGGGACTCCTATTGCCGTTCTAATTGGCTATGGTATTGCACGAGGAGGTGCTTCGGCTTGTAATGAATTGCGGAATGCTGTGTTTTCAAAGGTCGCTTTGCGAACAATTCGACTTGTTGCTAGGAAGGTATTTTCGCATCTTCATGATCTTGACCTTCAGTATCATTTAAGTCGTCAAACTGGGGCATTAAGTCGTACAATTGATCGTGGAACGCGTGGGATAAATTTCATTCTTTCTTCCATGGTATTCAATGTTGTACCGACTATATTAGAGATATCAATGGTTGCAGGCATTTTAGCATATAAGTTTGGTGCTCCATTTGCATTGGTTACATCTCTTGCTGTTGGCGGTTATGTTGCTTTCACCTTGTTTGTGACACAGTGGCGGACCAAATTTCGACAGGTTATGAACAAAGCTGACAATGATGCAAATACACGGGCTATTGATTCACTCATAAACTATGAGACTGTCAAATATTTCACTAATGAGGAATTTGAAGTTAAAAAATATGATGAGTTCCTAAAGAAGTATGAGGATGCTTCCCTGAAGACTCAGAGCAGTCTGGCGTTTCTTAATTTTGGTCAAAATATTATATTCAGCACAGCACTGTCAACGGCTATGGTTCTGTGCTCACAGGGCATAATGGCTGGAACGATGACTGTTGGTGATCTGGTTATGGTAAATGGGTTTGCTTTTCCAACTTTCATTACCACTCAATTTCCTTGGCACCGTTTATCGTGAGACGCGGCAAAGTCTTATTGATATGCAGTCAATGTTCTCTCTTCTTGAGGAAAAGGC

Fln Alignment:

sp_v1.1_unigene27461___PFLFKLAVDGXXXXXXXXXXXXXXXXXXXXXXAFLGTPIAVLIGYGIARGGASACNELRNAVFSKVALRTIRLVARKVFSHLHDLDLQYHLSRQTGALSRTIDRGTRGINFILSSMVFNVVPTILEISMVAGILAYKFGAPFALVTSLAVGGYVAFTLFVTQWRTKFRQVMNKADNDANTRAIDSLINYETVKYFTNEEFEVKKYDEFLKKYEDASLKTQSSLAFLNFGQNIIFSTALSTAMVLCSQGIMAGTMTVGDLVMVNGFAFPTFITTQF
A9NW03_______________PFLFKRAMD-----------ELTNGSTKLQSEYYIYVVASLLILSSLTKAISSGLNEVRYVVFAPIGHAVGRRIGVYLLQHILYLDLSFHLDKSSGVLLRILERAQRSVIHIFRAVVFTFIPTAIELVLVCALLSHQVGAAVAGIVLLAFLAYVIWTVKITTAAALSRIKANKFEERVSGKAIDALLNYETVVQFNNQSIEVVQYNQLLQSYQHAMLDAEYLSATLNGGQAAILSVGIAAVMVVTGLQVAKGMVGIGSLVLVNGLILQVASPLQF

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
694			28	71	1.0
697	28			71	1.0
698		28		71	1.0
699	28	71			1.0
702	71	28			1.0
708	71			28	1.0
712			28	71	1.0
713	28			71	1.0
714		42		57	1.0
754		80		20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain